Calmodulin, regulatory, and essential myosin light chain are evolutionary conserved proteins that, by binding to IQ motifs of target proteins, regulate essential intracellular processes among which are efficiency of secretory vesicles release at synapsis, intracellular signaling, and regulation of cell division. The yeast Saccharomyces cerevisiae calmodulin Cmd1 and the essential myosin light chain Mlc1p share the ability to interact with the class V myosin Myo2p and Myo4 and the class II myosin Myo1p. These myosins are required for vesicle, organelle, and mRNA transport, spindle orientation, and cytokinesis. We have used the budding yeast model system to study how calmodulin and essential myosin light chain selectively regulate class V myosin function. NMR structural analysis of uncomplexed Mlc1p and interaction studies with the first three IQ motifs of Myo2p show that the structural similarities between Mlc1p and the other members of the EF-hand superfamily of calmodulin-like proteins are mainly restricted to the C-lobe of these proteins. The N-lobe of Mlc1p presents a significantly compact and stable structure that is maintained both in the free and complexed states. The Mlc1p N-lobe interacts with the IQ motif in a manner that is regulated both by the IQ motifs sequence as well as by light chain structural features. These characteristic allows a distinctive interaction of Mlc1p with the first IQ motif of Myo2p when compared with calmodulin. This finding gives us a novel view of how calmodulin and essential light chain, through a differential binding to IQ1 of class V myosin motor, regulate this activity during vegetative growth and cytokinesis.Myosin V are processive motors that transport a variety of intracellular cargo in a manner that is timely, selectively, and reversibly regulated by its interaction with different proteins via their cargo bound domain (1, 2). Myosin V display a dimeric heavy chain containing several light chain binding sites called IQ motifs. The so-called IQ motif (ϳ23-25 residues), with a consensus sequence of the form IQXXXRGXXXR, is repeated tandemly (2-6 times) in the heavy chain of many myosins. These motifs are among the best known Ca 2ϩ -independent calmodulin (CaM) 3 and myosin light chain targets. Single or multiple repeats IQ motif-like sequences have been identified in myosin, kinases, and IQGAP-like and Ras-GEF signaling proteins in Alzheimer disease proteins (3-5). Tissue myosin V copurify with at least two light chains in addition to calmodulin, but the identity and binding sites of these light chains are unknown (6). It has been shown that either an essential light chain or CaM can occupy the first IQ motif of myosin V (7, 8). How such differential interaction is achieved is unknown. Nor is it clear if and when essential light chain and CaM compete for the same site (4, 9 -11). Recent structural and genetic studies point to a previously uncovered role for calmodulin/myosin light chain interaction with the class V myosin IQ motifs in regulating the cargo binding abiliti...