Congenital malformations the human hindbrain, including the cerebellum, are poorly understood largely because their recognition is a relatively recent advance for imaging diagnostics. Cerebellar malformations are the most obvious and best characterized hindbrain malformations due to their relative ease to view by MRI and the recent identification of several causative genes 1 . Malformations of the pons and medulla have also been described both in isolation and in association with cerebellar malformations 2 . Although little is understood regarding the specific developmental pathologies underlying hindbrain malformations in humans, much is known regarding the mechanisms and genes driving hindbrain development in vertebrate model organisms. Thus, studies in vertebrate models provide a developmental framework in which to categorize human hindbrain malformations and serve to inform our thinking regarding disrupted developmental processes and candidate genes. Here we survey the basic principles of vertebrate hindbrain development and integrate our current knowledge of human hindbrain malformations into this framework.The hindbrain controls numerous important physiological processes including respiration, circulation, arousal and motor coordination. Understanding the pathology of human hindbrain malformations, and devising strategies to diagnose and treat them ultimately relies on identifying the causative genes and elucidating the molecular and cellular mechanisms underling the early events that form the nervous system. Studies from vertebrate model systems have already revealed much of the genetic control that underlies the establishment of hindbrain structures and circuits controlling these functions. Given the high degree of neuroanatomical and functional conservation across vertebrates, insights from the analyses of brain development in model organisms are essential to decipher the developmental and genetic bases of human hindbrain malformations.