Branched-chain ␣-ketoacid dehydrogenase (BCKDH) catalyzes the critical step in the branched-chain amino acid (BCAA) catabolic pathway and has been the focus of extensive studies. Mutations in the complex disrupt many fundamental metabolic pathways and cause multiple human diseases including maple syrup urine disease (MSUD), autism, and other related neurological disorders. BCKDH may also be required for the synthesis of monomethyl branched-chain fatty acids (mmBCFAs) from BCAAs. The pathology of MSUD has been attributed mainly to BCAA accumulation, but the role of mmBCFA has not been evaluated. Here we show that disrupting BCKDH in Caenorhabditis elegans causes mmBCFA deficiency, in addition to BCAA accumulation. Worms with deficiency in BCKDH function manifest larval arrest and embryonic lethal phenotypes, and mmBCFA supplementation suppressed both without correcting BCAA levels. The majority of developmental defects caused by BCKDH deficiency may thus be attributed to lacking mmBCFAs in worms. Tissue-specific analysis shows that restoration of BCKDH function in multiple tissues can rescue the defects, but is especially effective in neurons. Taken together, we conclude that mmBCFA deficiency is largely responsible for the developmental defects in the worm and conceivably might also be a critical contributor to the pathology of human MSUD.Branched-chain amino acids (BCAAs), 2 leucine, isoleucine, and valine, are essential amino acids that are not only building blocks for protein synthesis but also play important physiological roles (1). Their catabolism is controlled by branched-chain ␣-ketoacid dehydrogenase (BCKDH), a mitochondrial multisubunit enzyme complex (see Fig. 1A). BCKDH is composed of three subunits, E1, E2 and E3, of which E1 and E2 are unique to this complex. The E1 subunit contains two components, E1␣ and E1, which in humans are encoded by BCKDHA and BCKDHB, respectively (2, 3). The E2 subunit is encoded by DBT (4). Autosomal recessive mutation in any of these genes results in BCKDH deficiency and causes maple syrup urine disease (MSUD, Online Mendelian Inheritance in Man (OMIM) 248600). Classic MSUD patients have less than 2% BCKDH activity, which results in elevated BCAAs and branched-chain ␣-ketoacids in tissues and plasma. If untreated, patients can develop life-threatening cerebral edema within 10 days of life. MSUD also has a chronic effect on the central nervous system, resulting in dysmyelination and mental retardation in young patients (5, 6).The neurotoxicity of MSUD has been attributed mainly to increased plasma leucine and its derivative, ␣-ketoisocaproic acid (5). They compete with other large neutral amino acids for transportation across the blood-brain barrier by the LAT1 amino acid transporter, causing decreased levels of large neutral amino acids that are precursors for key neuronal factors such as dopamine and serotonin, in the brain in humans (5), classic MSUD mice (7), and rats (8). Increased ␣-ketoisocaproic acid depletes glutamate, affecting transamination in the brain and c...