Detecting genomic changes represents a critical step in cellular responses to DNA damage. Here, we show that tyrosine phosphorylation of the protein acetyltransferase KAT5 (Tip60) increases in response to DNA damage in a manner that promotes KAT5 binding to the histone mark H3K9me3. This in turn triggers KAT5-mediated acetylation of the ATM kinase, promoting DNAdamage checkpoint activation and cell survival. We also establish that chromatin alterations per se can enhance KAT5 tyrosine phosphorylation and ATM-dependent signaling, and identify the proto-oncogene c-Abl as mediating this modification. These findings define KAT5 as a key sensor for genomic and chromatin perturbations, and highlight a prime role for c-Abl in such events.Maintenance of genome integrity is pivotal for cellular fitness 1 , wherein sensing genomic changes represents a critical step 2 . In response to DNA double-strand breaks (DSBs) within genomic DNA, chromatin organization is altered in an orchestrated manner to facilitate the cellular DNA damage response (DDR) 3,4 . One aspect of the DDR is checkpoint activation, which primarily slows or halts cell cycle progression 5 . Central to checkpoint signaling following DSB induction is the protein kinase ATM 6 . While ATM activation is clearly instigated by its association with the MRE11-RAD50-NBS1 (MRN) complex at DSB sites [7][8][9][10] , accumulating evidence suggests that ATM activity is potentiated by mechanisms that sense and respond to chromatin alterations in the context of DNA damage 11,12 . Accordingly, it was found that binding of the protein lysine acetyltransferase KAT5 (Tip60) to histone H3 trimethylated at lysine 9 (H3K9me3) promotes KAT5-dependent acetylation of ATM, thereby enhancing ATM activity 12 . How and whether KAT5 binding to H3K9me3 is regulated, however, has not yet been established. Here, we identify the accumulation of KAT5 tyrosine phosphorylation as a part of a mechanism for sensing chromatin alterations, including those generated after DNA damage, thereby promoting checkpoint signaling and cell survival upon such stimuli. We also establish that KAT5 tyrosine phosphorylation is mediated by the tyrosine kinase c-Abl, thus revealing how this kinase affects early steps in the DDR and broadening its potential as a drug target for cancer therapy.
KAT5 tyrosine phosphorylation upon DNA damageAs KAT5 binding to H3K9me3 promotes ATM activation 12 , we explored the potential regulation of the KAT5-H3K9me3 interaction. Thus, we purified KAT5 from human cells stably expressing Flag-tagged KAT5 before or after they had been treated with ionizing radiation (IR; Fig. 1a). As expected, when we tested the protein preparations in peptide binding studies, KAT5 bound an H3K9me3 peptide (M) more effectively than the corresponding unmethylated peptide (U; Fig. 1b, lanes 1 and 2). Strikingly, these studies Supplementary Fig. 1, KAT5 failed to bind detectably to peptides corresponding to the histone H3 methylation marks H3K4me3 and H3K27me3). Moreover, enhanced binding to the H3...