Background: Acute phase mediators promote metabolic changes by modifying circulating hormones. However, there is virtually no data about the link between glucagon and inflammatory parameters in obesity-related chronic low-grade inflammation. Study design: We performed both cross-sectional and longitudinal (diet-induced weight loss) studies. Methods: Circulating glucagon concentrations (ELISA), parameters of glucose and lipid metabolism, interleukin 6 (IL6), and complement factor B (CFB) were analyzed in 316 subjects (250 men and 66 women). The effects of weight loss were investigated in an independent cohort of 20 subjects. Results: Circulating glucagon significantly correlated with glucose (rZ0.407, P!0.0001), HbAlc (rZ0.426, P!0.0001), fasting triglycerides (rZ0.356, PZ0.001), and parameters of innate immune response system such as IL6 (rZ0.342, PZ0.050) and CFB (rZ0.404, PZ0.002) in obese subjects with altered glucose tolerance, but not in individuals with normal glucose tolerance (NGT). In obese and NGT subjects, glucagon was associated with fasting triglycerides (rZ0.475, PZ0.003) and CFB (rZ0.624, PZ0.001). In obese subjects, glucagon (PZ0.019) and CFB (PZ0.002) independently contributed to 26% of fasting triglyceride variance (P!0.0001) after controlling for the effects of age and fasting serum glucose concentration in multiple lineal regression models. Moreover, concomitant with fat mass, fasting triglycerides, and CFB, weight loss led to significantly decreased circulating glucagon (K23.1%, PZ0.004). Conclusions: According to the current results, acute phase reactants such as IL6 and CFB are associated with fasting glucagon in metabolically compromised subjects. This suggests that glucagon may be behind the association between inflammatory and metabolic parameters in obesity-associated chronic low-grade inflammation.