We have permeabilized the plasma membranes of Schizosaccharomyces pombe cell with nystatin and measured ATP-dependent Ca2+ uptake in the presence of K N 0 3 and a protonophore in order to inhibit Ca2 + uptake into the vacuole. ATP-dependent Ca2 + accumulation into non-vacuolar Ca2 . However, the K , value for Ca2+ uptake by the vacuolar exchanger, 0.1 mM, seems to be too high to control Ca2+ concentration at submicromolar levels.Recently two genes for P-types ATPase, PMRl and PMR2, were identified in S. cerevisiae [15]. The deduced amino acid sequence of PMRl and PMR2 proteins was similar to that of animal Ca2+-ATPases. It was suggested that PMRl encodes a Ca2 + -ATPase that controls the secretory pathways. Our group has recently identified a novel P-type ATPase gene, eta3 in S. pombe [l 11. The deduced amino acid sequence shows that cta3 gene encodes a P-type ATPase. A null mutation in eta3 leads to higher levels of free cytosolic Ca2+, and lower amounts of sequestered and bound Ca2' . When the permeability of the plasma membrane was loosened by DEAE-dextran treatment, uptake of Ca2 + in the null mutant was lower than in the wild type. These physiological results supported the conclusion that eta3 protein is involved in Ca2 + transport and homeostasis and suggested localization of eta3 protein in intracellular membranes.In the present work, we investigated Ca2+ accumulation into intracellular compartments in nystatin-permeabilized cells, which are freely permeable to ATP. In the presence of inhibitors of Ca2+ uptake into the vacuole, an ATP-dependent Ca2+ uptake, which could be inhibited by vanadate was detected. These results are the first biochemical evidence of Ca2+-ATPase in yeast. ATP-dependent Ca2+-uptake is reduced in the yeast strain MG4 harboring a null allele of cta3.