W. Microarray analysis of gene expression in mouse aorta reveals role of the calcium signaling pathway in control of atherosclerosis susceptibility. Am J Physiol Heart Circ Physiol 296: H1336 -H1343, 2009. First published March 20, 2009 doi:10.1152/ajpheart.01095.2008.-Inbred mouse strains C57BL/6J (B6) and C3H/HeJ (C3H) exhibit a marked difference in atherosclerotic lesion formation when deficient in apolipoprotein E (apoE Ϫ/Ϫ ), and the arterial wall has been identified as a source of the difference in atherosclerosis susceptibility. In the present study, differences in gene expression in aortic walls of the two strains were analyzed by microarrays. Total RNA was extracted from the aorta of 6-wk-old female B6 and C3H apoE Ϫ/Ϫ mice fed a chow or Western diet. There were 1,514 genes in chow fed mice and 590 genes in Western fed mice that were found to be differentially expressed between the two strains. Pathway analysis of differentially expressed genes suggested a role for the calcium signaling pathway in regulating atherosclerosis susceptibility. Oxidized LDL (oxLDL) induced a dose-dependent rise in cytosolic calcium levels in B6 endothelial cells. oxLDL-induced monocyte chemoattractant protein-1 production was inhibited by pretreatment with calcium chelator EGTA or intracellular calcium trapping compound BAPTA, indicating that calcium ions mediate the effect of oxLDL on monocyte chemoattractant protein-1 induction. The present findings demonstrate involvement of the calcium signaling pathway in the inflammatory process of atherogenesis. gene profiling; genetic susceptibility; monocyte chemoattractant protein-1 ATHEROSCLEROSIS IS A CHRONIC inflammatory disease of the large-and medium-sized arteries involving numerous genes, as well as their interactions with the environment. The mouse has been a powerful force in elucidating the genetic basis of atherogenesis. More than 80 genes have been confirmed to play a role in atherosclerosis by using gene-targeted or transgenic mice (21). Inbred mouse strains that display quantitative differences in susceptibility to atherosclerosis or associated traits have also been used to search for genes and pathways that give rise to the traits. C57BL/6 (B6) and C3H/HeJ (C3H) mice are two inbred strains that exhibit marked differences in atherosclerosis susceptibility when fed an atherogenic diet or when deficient in apolipoprotein E (apoE Ϫ/Ϫ ) (8,14). Strain B6 readily develops atherosclerosis, while strain C3H is highly resistant to it. We have observed various differences between the two strains in atherogenic processes involving the arterial wall, including differences in the retention of apoB-containing lipoproteins in the arterial wall (2), in the capacity to oxidize low-density lipoprotein (LDL) (2), and in the expression of proinflammatory genes upon stimulation with oxidized LDL (13). Through aorta transplantation, whereby aortic segments from B6.apoE Ϫ/Ϫ and C3H.apoE Ϫ/Ϫ mice were transplanted into the infrarenal aorta of their F 1 strains, we have demonstrated that th...