In this work cannabidiol
(CBD) was investigated as a possible drug
against the cytotoxicity of Aβ(31–35) and Aβ(25–35)
peptides with the help of atomistic molecular dynamics (MD) and well-tempered
metadynamics simulations. Four interrelated mechanisms of possible
actions of CBD are proposed from our computations. This implies that
one mechanism can be a cause or/and a consequence of another. CBD
is able to decrease the aggregation of peptides at certain concentrations
of compounds in water. This particular action is more prominent for
Aβ(25–35), since originally Aβ(31–35) did
not exhibit aggregation properties in aqueous solutions. Interactions
of CBD with the peptides affect secondary structures of the latter
ones. Clusters of CBD are seen as possible adsorbents of Aβ(31–35)
and Aβ(25–35) since peptides are tending to aggregate
around them. And last but not least, CBD exhibits binding to
MET
35
. All four mechanisms of actions can possibly
inhibit the Aβ-cytotoxicity as discussed in this paper. Moreover,
the amount of water also played a role in peptide clustering: with
a growing concentration of peptides in water without a drug, the aggregation
of both Aβ(31–35) and Aβ(25–35) increased.
The number of hydrogen bonds between peptides and water was significantly
higher for simulations with Aβ(25–35) at the higher concentration
of peptides, while for Aβ(31–35) that difference was
rather insignificant. The presence of CBD did not substantially affect
the number of hydrogen bonds in the simulated systems.