We want to demonstrate the feasibility of the concept of a cyber-physical system (CPS) by showing good correlation of insulin resistance by HOMA-IR with changes of state variables (SVs) such as R-ratio, Rw-ratio, calculated 24 h nonprotein respiratory quotient, and fat-burning fraction from serial measurements of weight and fat mass. We utilize principles of indirect calorimetry. We calculate SVs from published data of an energy perturbation study. We perform correlation analysis between changes of insulin resistance measured with HOMA-IR and selected SVs. The result of this correlation analysis confirms a highly significant correlation between HOMA-IR and the selected SVs. The implication of these results is that CPS is a suitable concept to indirectly measure and predict the otherwise verydifficult-or impossible-to-measure slow changes of SVs and capture them for the first time noninvasively. Serial fat and weight measurements and energy calculations can help unmask changes of insulin resistance in response to user's diet and exercise habits, creating the necessary environment to measure metabolic flexibility. Further, CPS has the potential to estimate cardiorespiratory fitness by indirectly estimating maximum oxygen uptake from measuring heart rate reserve, heart rate variability, and pulse oximetry changes with exercise.