Ovarian cells, including oocytes, granulosa/cumulus cells, theca cells and stromal cells, contain abundant mitochondria, which play indispensable roles in the processes of ovarian follicle development. Ovarian function is closely controlled by mitochondrial proteostasis and mitostasis. While mitochondrial proteostasis and mitostasis are disturbed by several factors, leading to dysfunction of ovarian function and initiating the mitochondrial unfolded protein response and mitophagy to maintain or recover ovarian function and mitochondrial function, but clear interactions between the two pathways in the ovary have not been fully elucidated. Here, we comprehensively summarize the molecular networks or regulatory mechanisms behind for further mitochondrial research in the ovary. This review, provides novel insights into the interactions between the mitochondrial unfolded protein response and mitophagy in ovarian functions.