“…This result was quite unexpected in that all the experiments performed in vivo and in vitro with strain R99, including those performed in the present work, have never suggested the existence of an intracellular stage in the life cycle of this pathogen in any of its hosts. The unexpected up-regulated genes were for: (i) recognition of intracellular pathogens, such as, TLR9 and NOD2 ; (ii) chemo-attraction of macrophages, natural killer cells, and lymphocytes such as, CCL4 (MIP-1β; Macrophage inflammatory protein-1β), a gene that was highly activated at all sampling points, and that was also early up-regulated in gills from infected eels (Callol et al, 2015a); (iii) regulatory CK such as, LTA (or TNF-β), IL-17 (implicated in triggering and mediating pro-inflammatory response, by inducing the expression of different pro-inflammatory CKs, CCs, antimicrobial peptides, growth factors among others); iv) IFN-related genes (associated with CD8 + T cells) such as, ifna2, Ifnb1, Ifnar1 , and Ifngr1; (v) CKs involved in the regulation and stimulation of haematopoiesis such as, IL-3, IL-4, IL-7 and CSF2 (this activation could lead to a rapid innate immune system replenishment, exacerbating the inflammatory response); (vi) the inducible NO synthase gene that mediates tumoricidal and bactericidal actions, mainly intracellular (Maeda and Akaike, 1998); and (vii) members of the inflammasome complex such as, NLRC4, PYCARD, and Caspase-1, that have been previously involved in macrophage death by pyroptosis induced by the facultative intracellular pathogen Legionella pneumophila (Case and Roy, 2011; Cerqueira et al, 2015). We also found evidence of a dysregulation of CK production.…”