Presenilin 1 (PS1) and presenilin 2 (PS2) are polytopic membrane proteins that are mutated in the majority of early onset familial Alzheimer's disease (FAD) cases. Two lines of evidence establish a critical role for PS in the production of -amyloid peptides (A). FAD-linked PS mutations elevate the levels of highly amyloidogenic A ending at residue 42 (A42), and cells with ablated PS1 alleles secrete low levels of A. Several recent reports have shown that the hydrophilic loop (HL) domain, located between transmembrane domains 6 and 7, contains sites for phosphorylation, caspase cleavage, and sequences that bind several PS-interacting proteins. In the present report, we examined the metabolism of PS polypeptides lacking the HL domain and the influence of these molecules on A production. We report that the deletion of the HL domain does not have a deleterious effect on the regulated endoproteolysis of PS, saturable accumulation of PS fragments, or the selfassociation of PS fragments. A production was not significantly altered in cells expressing HL-deleted PS polypeptides compared with cells expressing full-length PS. Importantly, deletion of the HL domain did not affect FAD mutation-mediated elevation in the production of A42. Furthermore, the deletion of the HL domain did not impair the role of PS1 or PS2 in facilitating Notch processing. Thus, our results argue against a biologically or pathologically relevant role for the HL domain phosphorylation and caspase cleavage and the association of PS HL domain-interacting proteins, in amyloid precursor protein metabolism and A production or Notch cleavage.Autosomal dominant mutations in genes encoding presenilin 1 (PS1) 1 and presenilin 2 (PS2) predispose individuals to familial early onset Alzheimer's disease (FAD) (1-3). Alzheimer's disease is pathologically characterized by the cerebral deposition of 40 -42 amino acid -amyloid (A) peptides, which are generated by the proteolytic processing of amyloid precursor protein (APP) (4, 5). PSs play an important role in the generation of A, as evidenced by the lack A production in cells established from PS1 Ϫ/Ϫ mice (6, 7). Furthermore, FAD-linked mutations in PS increase the production of highly fibrillogenic A42 (8 -11). PS are polytopic membrane proteins that undergo regulated endoproteolysis to generate saturable of stable NH 2 -(NTF) and COOH-terminal fragments (CTF), which are the preponderant PS-related species that accumulate in vivo (12,13). Although the precise steps involved in the maturation of synthetic PS polypeptides are not clearly defined, properly folded PS polypeptides are stabilized, undergo endoproteolysis, and form high molecular weight complexes (13-18). The vast majority of overexpressed full-length PS and transgene-derived polypeptides that correspond to the NTF fail to form stable complexes and are rapidly degraded (15,18,19). Whereas endoproteolytic cleavage is not required for biological activity of PS polypeptides (12,20,21), several lines of evidence indicate that the NTF and CTF ...