2The abbreviations used are: CID, collision-induced dissociation; DTT, dithiothreitol; ER, endoplasmic reticulum; FDR, (peptide) false discovery rate; FMO, microsomal flavin-containing monooxygenase; HCD, higher energy collisional dissociation; HEPPS, 3-[4-(2-hydroxyethyl)-1-piperazinyl]propanesulfonate; ICDID, isotope-coded dimedone/iododimedone (labeling); MAO, monoamine oxidase; P450 or CYP, cytochrome P450; TCEP, tris(carbethoxymethyl)phosphine;UGT, UDP-glucuronyl transferase.
SUMMARYThe lumen of the endoplasmic reticulum (ER) provides an oxidizing environment to aid in the formation of disulfide bonds, which is tightly regulated by both antioxidant proteins and small molecules. On the cytoplasmic side of the ER, cytochrome P450 (P450) proteins have been identified as a superfamily of enzymes that are important in the formation of endogenous chemicals as well as in the detoxication of xenobiotics. Our previous report described oxidative inhibition of P450 Family 4 enzymes via oxidation of the heme-thiolate cysteine to a sulfenic acid (-SOH) (Albertolle, M. E. et al. (2017) J. Biol. Chem. 292, 11230-11242). Further proteomic analyses of murine kidney and liver microsomes led to the finding that a number of other drug metabolizing enzymes located in the ER are also redox-regulated in this manner. We expanded our analysis of sulfenylated enzymes to human liver and kidney microsomes. Evaluation of the sulfenylation, catalytic activity, and spectral properties of P450s 1A2, 2C8, 2D6, and 3A4 led to the identification of two classes of redox sensitivity in P450 enzymes: heme thiolate-sensitive and thiol-insensitive. These findings provide evidence for a mammalian P450 regulatory mechanism, which may also be relevant to other drug-metabolizing enzymes. (Data are available via ProteomeXchange with identifier PXD007913.)
(INTRODUCTION)The endoplasmic reticulum (ER) is a site of protein translation, posttranslational processing, and small molecule metabolism (1). Posttranslational processing includes glycosylation of proteins for sorting, disulfide bond formation, and specific proteolytic cleavages.The ER lumen is an oxidizing environment that aids in the production of disulfide bonds, which is maintained at a homeostatic level by both small molecules (ascorbate) and proteins (protein disulfide isomerases) (2, 3). The cytosolic side of the ER remains a reducing environment to preserve the normal function of integral ER proteins.Cytochromes P450 (CYP, P450) are found in the cytoplasmic side of the ER and are most well-known for the ability to metabolize xenobiotics and important endogenous substrates (e.g., steroids and vitamins) (4). These proteins have been of interest in the pharmaceutical industry since their initial discovery, and enzymes in P450 Subfamilies 1A, 2C, 2D, and 3A are involved in the metabolism and clearance of a large majority of small molecule drugs currently approved for clinical use in humans (4). P450 regulation involves genetic and epigenetic aspects, as well as transcriptional regulation by bot...