The mononuclear phagocyte (MP) system consists of macrophages, monocytes, and dendritic cells (DCs). MP subtypes play distinct functional roles in steady-state and inflammatory conditions. Though murine MPs are well-characterized, their human homologs remain poorly understood. To address this gap, we created a gene expression compendium across 15-distinct human and 9-distinct murine MPs from lung, LN, blood, and spleen. This study identified corresponding human-mouse MP subtypes and determined marker genes shared or not between species counterparts. Unexpectedly, at the gene expression level, only 13-23% of the top 1000 marker genes overlapped in corresponding human-mouse MP counterparts, indicating a need for caution when translating mouse studies to human gene targets and functions. Lastly, CD88 was useful in both species to distinguish macrophage/monocytes from DCs. Our cross-species expression compendium serves as a resource for future translational studies to investigate beforehand whether pursuing specific MP subtypes, or gene will prove fruitful. 12 . Murine pulmonary MPs consist of alveolar macrophages (AMs), tissue trafficking monocytes, dendritic cell (DCs) subtypes 12, 13 , and three interstitial macrophages (IMs):two IMs, IM1-(CD206 hi MHCII + ) and IM2-(CD206 hi MHCII lo ), display classical macrophage characteristics, whereas the third IM, IM3-(CD206 lo MHCII + ), although displaying macrophage properties, has a higher rate of turnover and expresses pro-inflammatory, monocytic and DC genes 7 . Very little is known about IMs, in humans how to identify them, and in both species, humans and mice, how they functionally contribute to homeostasis, inflammation, or disease. Most notably, with the exception of AMs, all other MP subtypes described above reside in multiple organs 14,15,16,17 .Functionally, circulating monocytes traditionally have been viewed as precursors to tissue-resident macrophages. However, now we know that monocytes continuously traffic through non-lymphoid and lymphoid tissue, where they survey the environment, and unless there is a macrophage niche to fill, steady-state monocytes do not differentiate into self-renewing, tissue resident macrophages 18,19 . During inflammation, monocytes can differentiate into inflammatory and resolving macrophages, which display distinct properties from resident macrophages 10,20,21,22 . In lymphoid tissue, even though LN monocytes are highly present, their role in adaptive immunity is less defined than DCs 19,
.DCs are potent antigen-presenting cells that link innate and adaptive immunity. In the periphery, DCs can acquire pathogens, traffic through lymphatic vessels to draining LNs, and present exogenous antigens to cognate T cells, precipitating adaptive immunity 11,24,25,26,27 . In mice, there are two main DC types referred to as Batf3 + DC1 and Irf4 +