IntroductionTranslocations involving chromosome band 11q23 are found in a variety of hematologic malignancies, including both B-precursor and T-lineage acute lymphoblastic leukemias (B-and T-ALLs), acute myeloid leukemias (AMLs), and cases of myelodysplastic syndrome (MDS). Chromosome 11q23 rearrangements are present in most infant leukemias 1-3 and in secondary myeloid leukemias occurring after chemotherapy with topoisomerase inhibitors. [4][5][6] Invariably, such translocations generate a fusion gene encoding a chimeric protein in which the aminoterminal portion of MLL is fused to the carboxyterminal regions of more than 30 other proteins. 7,8 MLL is a mammalian homologue of the Drosophila gene trithorax, and its product functions as a master transcriptional regulator of developmental patterning and cell fate decisions. 9 The aminoterminal fragment of MLL in MLL fusion proteins uniformly includes 2 AT-hook domains and a region of homology with DNA methyltransferase, 10,11 while the carboxyterminal fragments of the numerous fusion partners show little or no structural similarity to each other.Armstrong et al 12 recently analyzed the gene expression patterns of a series of B-precursor ALLs, demonstrating a characteristic, highly distinct profile for cases with a rearranged MLL gene (MLL B-ALLs). This finding was independently confirmed in a large group of patients studied at St Jude Children's Research Hospital. 13 A major issue that remains to be addressed is the identification of the genes within the unique MLL B-ALL gene expression signature that serve as critical downstream targets during induction and maintenance of the leukemic phenotype. Among possible candidates, members of the HOX gene family are perhaps the most attractive. 8 Trithorax, the Drosophila counterpart of MLL, is required for the proper maintenance of cell type-specific patterns of HOM-C gene expression during embryogenesis. 14 In mice, heterozygous germ-line inactivation of Mll resulted in homeotic transformations of the axial skeleton associated with abnormalities in the maintenance of Hoxa7 and Hoxc9 gene expression. 9 Retroviral insertional mutagenesis experiments in mice implicated Hoxa9 in collaboration with Meis1 in myeloid leukemogenesis, 15 while subsequent transgenic studies showed that the aberrant expression of Hoxa9 and Hoxa10 in murine hematopoietic precursors induces leukemia in cooperation with Meis1. 16,17 Finally, in a very recent report, MLL was shown to regulate HOX gene expression by binding directly to promoter sequences. 18 In a previous study of human T-ALLs, 19 we identified cases with the MLL-ENL fusion oncogene, but did not compare their gene expression profiles with those of T-ALLs harboring other 19 Here we further analyze gene expression patterns in T-ALLs with MLL rearrangements and show that activation of HOXC6, HOXA9, and HOXA10, as well as the HOX gene cofactor MEIS1, defines a core gene transcriptional program shared by lymphoid leukemias expressing MLL fusion genes. Interestingly, in both the T and B line...