20Ozonide antimalarials, OZ277 (arterolane) and OZ439 (artefenomel), are synthetic peroxide-21 based antimalarials with potent activity against the deadliest malaria parasite, Plasmodium 22 falciparum. Here we used a "multi-omics" workflow, in combination with activity-based 23 protein profiling (ABPP), to demonstrate that peroxide antimalarials initially target the 24 haemoglobin (Hb) digestion pathway to kill malaria parasites. 25 Time-dependent metabolomic profiling of ozonide-treated P. falciparum infected red blood 26 cells revealed a rapid depletion of short Hb-derived peptides followed by subsequent alterations 27 in lipid and nucleotide metabolism, while untargeted peptidomics showed accumulation of 28 longer Hb-derived peptides. Quantitative proteomics and ABPP assays demonstrated that Hb-29 digesting proteases were increased in abundance and activity following treatment, respectively. 30 The association between ozonide activity and Hb catabolism was also confirmed in a K13-31 mutant artemisinin resistant parasite line. To demonstrate that compromised Hb catabolism 32 may be a primary mechanism involved in ozonide antimalarial activity, we showed that 33 parasites forced to rely solely on Hb digestion for amino acids became hypersensitive to short 34 ozonide exposures. 35 Quantitative proteomics analysis also revealed parasite proteins involved in translation and the 36 ubiquitin-proteasome system were enriched following drug treatment, suggestive of the 37 parasite engaging a stress response to mitigate ozonide-induced damage. Taken together, these 38 data point to a mechanism of action involving initial impairment of Hb catabolism, and indicate 39 that the parasite regulates protein turnover to manage ozonide-induced damage. 40 3 41
Author Summary
42The ozonides are a novel class of fully synthetic antimalarial drugs with potent activity against 43 all parasite species that cause malaria, including the deadliest, Plasmodium falciparum. With 44 the emergence of resistance to current frontline artemisinin-based antimalarials, new drugs are 45 urgently needed and a clear understanding of their mechanism of action is essential so that they 46 can be optimally deployed in the field. Here, we studied the biochemical effects of two 47 ozonides, OZ277 (marketed in India in combination with piperaquine) and OZ439 (in Phase 48 IIb clinical trials) in P. falciparum parasites using an untargeted multi-omics approach 49 consisting of proteomics, peptidomics and time-dependent metabolomics, along with activity-50 based protease profiling. We found that the ozonides initially disrupt haemoglobin metabolism 51 and that they likely engage the parasite proteostatic stress response. Furthermore, when the 52 duration of ozonide exposure was extended beyond 3 hours to reflect clinically-relevant 53 exposure periods, additional parasite biochemical pathways were perturbed. This 54 comprehensive analysis provides new insight into the antimalarial mode of action of ozonides 55 and provides new opportunities for inter...