Topoisomerase II is a target for a number of chemotherapeutic agents used in the treatment of cancer. Its essential physiological role in modifying the topology of DNA involves the generation of transient double-strand breaks. Anti-cancer drugs, such as mitoxantrone, that target this enzyme interrupt its catalytic cycle and give rise to persistent double strand breaks, which may be lethal to a cell. We investigated the role of such lesions in signaling the activation of the transcription factor nuclear factor B (NFB) by this drug. Mitoxantrone activated NFB and stimulated IB␣ degradation in the promyelocytic leukemia cell line HL60 but not in the variant cells, HL60/MX2 cells, which lack the  isoform of topoisomerase II and express a truncated ␣ isoform that results in an altered subcellular distribution. Treatment of sensitive HL60 cells with mitoxantrone led to a depletion of both isoforms, suggesting the stabilization of transient DNA-topoisomerase II complexes. This depletion was absent in the variant cells, HL60/MX2. Activation of caspase 3 by mitoxantrone was also impaired in the HL60/MX2 cells. NFB activation in response to tumor necrosis factor and bleomycin, the latter causing topoisomerase II-independent DNA damage, was intact in both cell lines. An inhibitor rather than a poison of topoisomerase II, Imperial Cancer Research Fund 187 (ICRF 187) the mechanism of which does not involve the generation of double strand breaks, did not activate NFB, nor did it induce apoptosis in parental HL60 cells. However, ICRF 187 protected against IB degradation in parental HL60 cells in response to mitoxantrone. This protection was also shown with another topoisomerase II inhibitor, merbarone, which is structurally and functionally distinct from ICRF 187. Their effects were specific, as neither protected against tumor necrosis factorstimulated IB degradation. The poisoning of topoisomerase II with resultant DNA damage is therefore a critical signal for NFB activation.Agents that induce stress in cells, such as ionizing radiation, reactive oxygen species, and anti-neoplastic drugs, change the expression of many genes by affecting transcription factors, including AP1, NF-AT, NFB, 1 and Egr-1 (1-7). Such genes may encode proteins that determine the commitment of a cell to mitotic arrest, damage repair, proliferation, or even apoptosis. The regulation and role of the inducible transcription factor NFB has been studied intensely during recent years. NFB is present in diverse cell types, activated in response to diverse stimuli by complex signaling pathways involving several protein-protein interactions and phosphorylations (8 -10). Typically, NFB resides in the cytosol as a dimer composed of subunits belonging to the Rel family of proteins, the prototype comprising a p50 and p65/RelA subunit. p50/p65(RelA) heterodimers have a potent transcriptional activating potential, whereas p50 homodimers lack transactivation activity due to the absence of a transcriptional activation domain (9,11,12).NFB heterodimers are sequestered ...