Coenzyme Q10 (CoQ10, ubiquinone) is an essential cofactor in the electron transport chain, serves as a potent antioxidant in mitochondria and lipid membranes, and is often used as a dietary supplement for a number of diseases including cardiovascular diseases. Recently, we obtained evidence that CoQ10 (Kaneka Q10âą) affects the expression of hundreds of human genes. To decipher the functional and regulatory connections of these genes, a literature search combined with transcription factor binding site analysis was performed using Genomatix BiblioSphere and MatInspector. This inâsilico analysis revealed 17 CoQ10âinducible genes which are functionally connected by signalling pathways of Gâprotein coupled receptors, JAK/STAT, integrin, and betaâarrestin. Promoter analysis of these CoQ10âinducible genes showed one group of NFÎș Bâregulated genes, namely IL5, thrombin, vitronectin receptor and Câreactive protein (CRP). Furthermore, a common promoter framework containing binding sites of the transcription factor families EVI1, HOXF, HOXC, and CLOX was identified in the promoters of IL5, CRP, and vitronectin receptor. The identified CoQ10âinducible genes and pathways play an important role in inflammatory response. Since these effects are based on an inâvitro study, the effect of CoQ10 on vascular health in vivo needs to be addressed in further animal and/or human intervention studies. IUBMB Life, 59: 628â633, 2007