A new conformational search program, HUNTER, connected with the
force fields MMP2 and MM3(92) is presented. The program accepts all types
of molecules with most different substructures, considers stereochemical
facts, and covers conformational space efficiently and completely. The most
important facilities are an automated analysis of the stereochemistry
including topographical facts, a separate perturbation of the acyclic and
cyclic parts of the molecule using modified corner flapping, and an
incremental rotation around single bonds with fixed flap and rotation
angles, respectively; an exclusion of high energy structures by simulated
annealing; the choice of the conformer lowest in energy, which is new as an
initial structure for the next sampling run; and the use of a reduced set
of dihedral angles to define a conformation. A specifically devised graphic
interface, SERVANT, is used to feed in and control all informations
necessary for a program run and to visualize the results. Most of the
parameters are user‐defined and thereby allow a flexible search, including
a search for the most stable diastereomer. The efficiency of the different
parameter sets was tested in calculation with cycloundecane (12),
(Z)‐oct‐3‐ene (13), and sipholenol‐A monoacetate (14).
The best performance regarding the number of different low‐energy
conformers was achieved with 60° (14) and 90° flaps
(12), respectively, including substituent correction for the cyclic
parts, and with 105° (14) and 120° rotations (13),
respectively, for the acyclic parts. In comparison to the stochastic search
routine implemented in MM3(92), HUNTER performed two (12) to six
(14) times better. © 1997 John Wiley & Sons, Inc. J
Comput Chem 18: 1264–1281, 1997