14European settlement and drought have significantly impacted the hydrology of the Coorong a shallow 15 coastal lagoon complex in South Australia, which is part of a terminal wetland at the Mouth of the River 16Murray. An increased salinity associated with lower water levels and progressive isolation from ocean flushes 17 contributed to a severe decline in ecological diversity over the past decades. Here we have conducted a 18 molecular and stable isotopic study of a sedimentary core from the northern Coorong Lagoon spanning more 19 than 5000 years to investigate the recent palaeoenvironmental history of the ecosystem. Major alterations were 20 evident in many biogeochemical parameters in sediments deposited after the 1950s coinciding with the 21 beginning of intensified water regulations. The most prominent shift occurred in δ 13 C profiles of C 21 -C 33 n-22 alkanes from average values of -23.5 ‰ to an average of -28.2 ‰. Further changes included decreases in carbon 23 preference index (CPI) and average chain length (ACL) of the n-alkane series as well as significant increases in 24 algal (e.g. C 20 HBI, long-chain alkenes and C 29 -alkadiene) and bacterial (e.g.
13C depleted short-chain n-alkanes 25 and hopanoids, δ 13 C: -35.9 to -30.1 ‰) derived hydrocarbons. Long-chain n-alkanes with a strong odd-over-26 even predominance as observed here are typically attributed to terrestrial plants. In the Coorong however, 27 terrestrial input to sedimentary OM is only minor. Therefore changes in the before mentioned parameters were 28 2 attributed to a source transition from a major contribution of macrophytes towards predominantly microalgae 29 and bacteria. 30 δD values of C 21 -C 33 n-alkanes showed a general trend towards more enriched values in younger sediments, 31indicating an overall rising salinity. However, the most pronounced positive shift in these profiles again 32 occurred after the 1950s. Altogether this study demonstrates that the recent human induced changes of the 33 Coorong hydrology, compounded by a severe drought led to an increase in salinity and alterations of primary 34 production which have been much more significant than natural variations occurring throughout the Holocene 35 over several thousands of years. 36