The epidemiology of IA, the major invasive mould infection in immunocompromised patients, has evolved over the last several decades. During the 1990s, increasing morbidity and mortality from these infections, particularly amongst the increasing numbers of patients being treated for haematological malignancies and those undergoing allogeneic haematopoietic stem cell transplantation, became a universal experience in many tertiary care medical centres. Changes in transplantation practices, including prophylaxis directed against Candida spp. and viral infections, helped to redefine the population at risk and the timing of invasive aspergillosis during the post-transplantation period. Molecular epidemiological studies of these ubiquitous organisms have improved our understanding of the epidemiology of these infections in the hospital and have documented emerging Aspergillus species causing infection. Recent years ushered in an era of newer mould-active agents, the echinocandins and the extended-spectrum triazoles, voriconazole and posaconazole, to treat and prevent invasive fungal diseases. The potential impact of these antifungal agents in reshaping the epidemiology of invasive mould infections is yet to be established, but early reports from some medical centres have noted a decline in the incidence of invasive aspergillosis and the emergence of non-Aspergillus mould infections.