The phylogenetic position of tetrapods relative to the other two living sarcopterygian lineages (lungfishes and the coelacanth) has been subject to debate for many decades, yet remains unresolved. There are three possible alternatives for the phylogenetic relationships among these three living lineages of sarcopterygians, i.e., lungfish as living sister group of tetrapods, the coelacanth as closest living relative of tetrapods, and lungfish and coelacanth equally closely related to tetrapods. To resolve this important evolutionary question several molecular data sets have been collected in recent years, the largest being the almost complete 28S rRNA gene sequences (about 3500 bp) and the complete mitochondrial genomes of the coelacanth and a lungfish (about 16 500 bp each). Phylogenetic analyses of several molecular data sets had not provided unequivocal support for any of the three hypotheses. However, a lungfish+tetrapod or a lungfish+coelacanth clade were predominantly favored over a coelacanth+tetrapod grouping when the entire mitochondrial genomes alone or in combination with the nuclear 28S rRNA gene data were analyzed with maximum parsimony, neighbor-joining, and maximum likelihood phylogenetic methods. Also, current paleontological and morphological data seem to concur with these molecular results. Therefore the currently available molecular data seems to rule out a coelacanth+tetrapod relationship, the traditional textbook hypothesis. These tentative molecular phylogenetic results point to the inherent difficulty in resolving relationships among lineages which apparently originated in rapid succession during the Devonian.Correspondence to: A. Meyer Present address: 1 Museo nacional de Ciencias Naturales, Jose Gutierrez Abascal, 2, E-28006 Madrid, Spain 2 Department of Biology, University of Constance, Postfach 5560, D-78457 Constance, Germany; e-mail: axel.meyer@uni.konstanz.de T he transition from life in water to life on land was perhaps one of the most significant events in the evolution of vertebrates (e.g. Panchen and Smithson 1987). This major evolutionary transition involved many sweeping morphological (e.g., evolution of limbs and air breathing), physiological, and behavioral changes, but nonetheless it seems to have taken place within an astonishingly short period of time of only 10-20 million years (Carroll 1988;Maisey 1996;Cloutier and Ahlberg 1996). It is well established that the early tetrapods evolved from lobe-finned fishes (Sarcopterygii) and not from rayfinned fishes (Actinopterygii; e.g., Romer 1966). However, due to the general scarcity of fossils, and the difficulty in character definitions, hence homology assignments, it has been highly controversial which lineage of the sarcopterygians is the one most closely related to land vertebrates (Cloutier and Ahlberg 1996;Forey 1988;Schultze 1994; for a review see Meyer 1995). Sarcopterygians are currently divided into three major groups (Table 1): Rhipidistia, Actinistia, and Dipnoi (e.g., Carroll 1988; Schultze 1994; Table 1). Rhipidisti...