In 2004, six puppies and one adult dog from a total of four premises were subjected to necropsy evaluation. For five of the seven dogs, disease caused by canine distemper virus (CDV) infection was suspected based on clinical signs. In all of the dogs, a diagnosis of CDV infection was established by the presence of compatible gross and histologic lesions, immunohistochemical labeling for CDV antigen, and detection of CDV RNA by reverse transcription-PCR. To further characterize the CDV strains detected in the four cases, complete gene sequences were determined for the hemagglutinin (H) and fusion (F) protein genes, while partial gene sequencing was performed for the phosphoprotein gene. A total of 4,508 bases were sequenced for the CDV strains detected from each of the four cases. Two cases were found to have identical sequences except for 2 bases in the intergenic region of the F and H genes. Phylogenetic analysis strongly suggested an evolutionary relationship between sequences detected in these two cases and those of phocine distemper virus 2 and two other strains of CDV not previously detected in the continental United States. Clear phylogenetic relationships were not established for viruses detected in the two additional cases; however, one strain showed similarity to CDV strains detected in a panda from China. Importantly, the three CDV strains detected were demonstrated to be genetically distinct from known vaccine strains and strains previously reported in the continental United States.Canine distemper virus (CDV) is the etiological agent of one the most important viral diseases of wild and domestic Canidae (dog, dingo, fox, coyote, jackal, and wolf) (2). It occurs worldwide and produces high morbidity and mortality in immunologically naïve populations (22,29). This virus also infects a broad range of other animals, such as Mustelidae (ferrets, minks, skunks, weasels, and badgers), Procyonidae (raccoons and pandas), Ursidae (bears), Viverridae (civets, genets, and linsangs), hyaenidae (hyenas), and Felidae (lions and tigers) (2,3,4,10,12,16,36). Canine distemper virus is classified in the genus Morbillivirus within the family Paramyxoviridae and has an unsegmented, negative-sense, single-stranded, ϳ15.7-kb RNA genome and an enveloped virus particle that is 150 to 300 nm in diameter (29). The pathogenesis of CDV infection in dogs has been well characterized (2,22,29,35). The genome of CDV encodes the following virion proteins: matrix (M), fusion (F), hemagglutinin (H), nucleocapsid (N), polymerase (L), and phosphoprotein (P). The H gene protein is responsible for viral attachment to the cell host (38) and may also play a role in induction of protective immunity (11). The H protein is one of the most variable morbillivirus proteins and thus has often been used to assess genetic changes between CDV isolates (8,9,17,18,20,21,23,26,28,30).In this study, postmortem findings, immunohistochemical labeling, and reverse transcription (RT)-PCR specific for CDV genomic RNA established a definitive diagnosis of diseas...