Characteristic and variability of five complete aphid mitochondrial genomes: Aphis fabae mordvilkoi, Aphis craccivora, Myzus persicae, Therioaphis tenera and Appendiseta robiniae (Hemiptera; Sternorrhyncha; Aphididae)

Воронова, Нина Владимировна; Levykina, Sofiya; Warner, Derek; Bandarenka, Yury; Жоров, Д. Г.

doi:10.1016/j.ijbiomac.2019.12.276

Cited by 19 publications

(12 citation statements)

References 73 publications

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“…The CRs of Gryllotalpidae show low variations in lengths, which range from 863 bp in G. henana to 920 bp in the Korean G. orientalis . The low variations of CR in length are likely attributed to the lacking of conspicuous repeats, which are often found in other insects [ 6 , 54 , 64 , 65 , 66 ]. Two kinds of short repeats were detected in Gryllotalpidae for the first time ( Supplementary Table S5 ).…”

Section: Resultsmentioning

confidence: 99%

Mitogenomic Comparison of the Mole Crickets Gryllotalpidae with the Phylogenetic Implications (Orthoptera: Ensifera)

Miao

2022

Insects

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Owing to limited molecular data, the phylogenetic position of the family Gryllotalpidae is still controversial in the infraorder Gryllidea. Mitochondrial genome (mitogenome) plays a crucial role in reconstructing phylogenetic relationships and revealing the molecular evolution of insects. However, only four mitogenomes have been reported in Gryllotalpidae to date. Herein, we obtained the first mitogenomes of Gryllotalpa henana Cai & Niu, 1998 and the Chinese G. orientalis Burmeister, 1838, made a detailed comparison of all mitogenomes available in Gryllotalpidae and reconstructed the phylogeny of Gryllidea based on mitogenomes using Bayesian inference (BI) and maximum likelihood (ML) methods. The results show that the complete mitogenome sequences of G. henana (15,504 bp) and G. orientalis (15,497 bp) are conserved, both exhibiting the double-stranded circular structure, typical gene content and the ancestral insect gene arrangement. The complete mitogenome of G.henana exhibits the lowest average AT content ever detected in Gryllotalpidae, and even Gryllidea. The gene nad2 of both species has atypical initiation codon GTG. All tRNAs exhibit typical clover-leaf structure, except for trnS1 lacking the dihydrouridine (DHU) arm. A potential stem–loop structure, containing a (T)n(TC)2(T)n sequence, is detected in the control region of all gryllotalpids investigated and is likely related to the replication initiation of the minority strand. The phylogenetic analyses recover the six families of Gryllidea as Gryllotalpidae + (Myrmecophilidae + (Mogoplistidae + (Trigonidiidae + (Phalangopsidae + Gryllidae)))), similar to the trees based on transcriptomic and mitogenomic data. However, the trees are slightly different from the multilocus phylogenies, which show the sister-group relationship of Gryllotalpidae and Myrmecophilidae. The contradictions between mitogenomic and multilocus trees are briefly discussed.

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Section: Resultsmentioning

confidence: 99%

Mitogenomic Comparison of the Mole Crickets Gryllotalpidae with the Phylogenetic Implications (Orthoptera: Ensifera)

Miao

2022

Insects

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“…Our analyses show that the lengths of the non-coding control region (CR) and repeat region (RR) vary widely among mitogenomes of different aphid species, which in turn can drive major differences in mitogenome size. Aphids with larger mitogenomes usually contain longer CRs or RRs, such as the larger tandem RR in A. glycines (2343 bp) [ 63 ] and S. sinisalicis (1489 bp) [ 22 ], and the larger CR in M. persicae (2531 bp) [ 59 ] and G. ficicola (1598 bp) [ 55 ]. The CR has been thought to play important role in the transcription and replication of mitogenomes [ 75 ].…”

Section: Discussionmentioning

confidence: 99%

Insights into the Evolution of Aphid Mitogenome Features from New Data and Comparative Analysis

Zhang

Liu

et al. 2022

Animals

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The complete mitochondrial genomes and their rearrangement patterns can provide useful information for inferring evolutionary history of organisms. Aphids are one of the insect groups with some unique mitogenome features. In this study, to examine whether some features in aphid mitogenomes are independent species-specific evolutionary events or clade-specific events at certain taxonomic levels, we sequenced three new aphid mitogenomes (Hormaphidinae: Ceratovacuna keduensis, Pseudoregma panicola; Lachninae: Nippolachnus piri) and compared them with all known aphid mitogenomes. The three mitogenomes are 16,059–17,033 bp in length, with a set of 37 typical mitochondrial genes, a non-coding control region and a tandem repeat region. The gene orders of them are all highly rearranged. Within the subfamily Hormaphidinae, the presence of repeat region and mitogenome rearrangement in Cerataphidini species but not in the other two tribes indicate that these may be Cerataphidini-specific features. The same gene rearrangement pattern in the two Lachninae species, N. piri (Tuberolachnini) and Stomaphis sinisalicis (Stomaphidini), supports that this feature should be at least derived from the common ancestor of two tribes. Overall, our data and analyses provide new insights into the evolutionary patterns of gene rearrangement and repeat region in aphid mitogenomes, and further corroborate the potential role of gene rearrangement in elucidating the evolutionary history of different insect lineages.

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“…Most of the protein-coding genes terminate with TAA, but nad4 and nad4L terminate with CAT; cox1 with ATT; and nad1 with AAT. The mitogenome content and organization of C. fragaefolii is similar to other genera in the tribe Macrosiphini, including Cavariella salicicola (Wang et al 2013), Diuraphis noxia (Zhang et al 2014), Indomegoura indica (Hong et al 2019), Myzus persicae (Voronova et al 2020), and Sitobion avenae (Zhang et al 2016). These taxa however differed from Acyrthosiphon pisum (International Aphid Genomics Consortium 2010) in the position of one of the trnS genes.…”

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confidence: 78%

The complete mitochondrial genome of the strawberry aphid Chaetosiphon fragaefolii Cockerell, 1901 (Hemiptera: Aphididae) from California, USA

Acosta

Alcantar

Alier-Reyes

et al. 2021

Mitochondrial DNA Part B

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The aphid Chaetosiphon fragaefolii Cockerell, 1901 is an agricultural pest and known vector of strawberry viruses. To better understand its biology and systematics, we performed a genomic analysis on C. fragaefolii collected from Quinalt strawberry plants from Pacific Grove, Monterey county, California, USA using Oxford Nanopore and Illumina sequencing. The resulting data were used to assemble the aphids complete mitogenome. The mitogenome of C. fragaefolii is 16,108 bp in length and contains 2 rRNA, 13 protein-coding, and 22 tRNA genes (GenBank accession number LC590896). The mitogenome is similar in content and organization to other Aphididae. Phylogenetic analysis of the C. fragaefolii mitogenome resolved it in a fully supported clade in the tribe Macrosiphini. Analysis of the cox1 barcode sequence of C. fragaefolii from California found exact and nearly identical sequences to C. fragaefolii and Chaetosiphon thomasi Hille Ris Lambers, 1953, suggesting the two species are conspecific.

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Characteristic and variability of five complete aphid mitochondrial genomes: Aphis fabae mordvilkoi, Aphis craccivora, Myzus persicae, Therioaphis tenera and Appendiseta robiniae (Hemiptera; Sternorrhyncha; Aphididae)

Cited by 19 publications

References 73 publications

Mitogenomic Comparison of the Mole Crickets Gryllotalpidae with the Phylogenetic Implications (Orthoptera: Ensifera)

Mitogenomic Comparison of the Mole Crickets Gryllotalpidae with the Phylogenetic Implications (Orthoptera: Ensifera)

Insights into the Evolution of Aphid Mitogenome Features from New Data and Comparative Analysis

The complete mitochondrial genome of the strawberry aphid Chaetosiphon fragaefolii Cockerell, 1901 (Hemiptera: Aphididae) from California, USA

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