We present the whole‐rock and mineral chemical data of the Khasi meta‐mafic/basic‐trondhjemite intrusives (KMI) and meta‐tonalite‐trondhjemite (MTT) that coevally emplaced the Proterozoic Shillong Group (SG) of Shillong Plateau, northeast (NE) India and discuss their petrogenetic‐tectonic origin. The calc‐alkaline to tholeiite KMI are compositionally transitional between hornblende‐gabbro; hornblende‐diorite and minor‐hornblendite. They show Ta–Nb troughs and strong decoupling large‐ion lithophile/high field strength elements (HFSE) signature consistent with subduction zone‐related basic magmas. The calcic to calc‐alkaline, low‐Al2O3, and I‐type metaluminous Fe‐hedenbergite‐trondhjemite (KMT) exhibits similar trace and rare earth elements (REE) distribution to the KMI. The MTT on the other hand are depleted in trace elements and REE, and correspond with the I‐type granitoids, and are comparable to Proterozoic to Phanerozoic tonalite‐trondhjemite‐granodiorites. Gentle negative sloping of REE in KMI ([La/Lu]CN = 4.04 to 6.35) with moderate LREE, suggests partial melting or, fractional crystallization from a transitional source between garnet and spinel lherzolite. Although almost a flat pattern ([La/Lu]CN = 3.70 to 4.05) for MTT entails a high degree of partial melting from sources similar to Archaean Mafic Composite or Archaean Tholeiite. Trace elemental modellings ([Sr/Y] vs. Y and [La/Yb]N vs. YbN) for MTT infer low pressure (<15 kbar) and high degree partial melting of >50% in equilibrium with 10% garnet +90% amphibole residue. A relatively flat REE pattern with some elevated HREE of MTT compared to KMI suggests for depleted source. Bimodal plutonism and the prevalence of meta‐dacite‐rhyolite in SG invokes for tonalite‐trondhjemite‐dacite setting of a continental arc or, active continental margin tectonic setting. Emplacement of KMI initiated in a temporary relax‐extensional phase and MTT in a compressional regime. This is possibly caused by an over‐thickened crust later subjected to orogenic collapse, exhumation‐metamorphism, and decompressional melting. This event might have taken place between 1.0 to 0.5 Ga during the Pan‐African Orogenic crustal growth, linked to the amalgamation of Gondwana.