The protein family known as fp-1 provides mussel byssus with a protective outer coating and has drawn much attention for its water resistant bioadhesive properties in vitro. A new fp-l isolated from the green shell mussel Perna canaliculus (pcfp-1) reveals a composition dominated by only four amino acids: 3,4-dihydroxyphenyl-L-alanine (dopa), lysine, proline, and valine at ~20 mol % each. SDS-PAGE and MALDI-TOF mass spectrometry detected size variants at 48 and 52 kDa in preparations of purified Pcfp-1. The N-terminal sequence enabled construction of oligonucleotide primers for PCR and RACE-derived cDNAs from which the complete sequence of four variants was deduced. pcfp-1 deviates from all known homologues in other mussels in several notable respects: its mass is half, most of its sequence is represented by 75 tandem repeats of a tetrapeptide, i.e., PY*VK, in which Y* is dopa, prolines are not hydroxylated, and thiolate cysteines are clustered in homologous sequences at both the amino and carboxy termini. Amino acids in the repeat sequence show a striking resemblance to proline-rich cell wall proteins with tandemly repeated PPVYK pentapeptides [Hong, J. C., Nagao, R. T., and Key, J. L. (1987) J. Biol. Chem. 262,[8367][8368][8369][8370][8371][8372][8373][8374][8375][8376]. Cysteine plays a key role in cross-linking pcfp-1 by forming adducts with dopaquinone. Significant 5-S-cysteinyldopa and smaller amounts of 2-S-cysteinyldopa were detected in hydrolysates of the byssal threads of P. canaliculus. The cross-links could also be formed by oxidation of pcfp-1 in vitro using mushroom tyrosinase. Cysteinyldopa cross-links were present in trace amounts only in the byssus of other mussel species.Mussel adhesive proteins have become important macro-molecular paradigms for engineering new adhesive polymers with bio-inspired attributes. Many recent developments in biotechnology (1,2), wood and paper processing (3), and biomedical materials (4,5) are pointedly mimicking mussel adhesive chemistry. A common theme involves introducing the 3,4-dihydroxyphenylalanine (dopa)1 functionality as well as additional flanking sequences of mussel adhesive proteins into other polymer backbones (6). Dopa, however, is revealing a chemical versatility that is more complex than first imagined (7); consequently, a better fundamental understanding of how this versatility is controlled and exploited in nature is needed.As in other areas of biological investigation, the exploration of homologous systems often leads to unanticipated insights into structure-function relationships. This case in point compares byssal coating protein known as pcfp-1 from the green shell mussel Perna canaliculus (Gmelin) with mefp-1 from the blue mussel Mytilus edulis L. mefp-1 was first isolated from M. edulis, † This research was supported by a grant from the National Institutes of Health (R01 DE015415). ‡ GenBank accession numbers AY960603 (fp1-1), AY960604 (fp1-2), AY960605 (fp1-3), and AY960606 (fp1-4). -2,3-cis-3,4-dihydroxyproline (11,12). dopa has be...