The active site of [Fe-Fe]-hydrogenases is composed of a di-iron complex, where the two metal atoms are bridged together by a putative di(thiomethyl)amine molecule and are also ligated by di-nuclear ligands, namely carbon monoxide and cyanide. Biosynthesis of this metal site is thought to require specific protein machinery coded by the hydE, hydF, and hydG genes. The HydF protein has been cloned from the thermophilic organism Thermotoga maritima, purified, and characterized. The enzyme possesses specific amino acid signatures for GTP binding and is able to hydrolyze GTP. The anaerobically reconstituted TmHydF protein binds a [4Fe-4S] cluster with peculiar EPR characteristics: an S ؍ 1/2 signal presenting a high field shifted g-value together with a S ؍ 3/2 signal, similar to those observed for [4Fe-4S] clusters ligated by only three cysteines. HYSCORE spectroscopy experiments were carried out to determine the nature of the fourth ligand of the cluster, and its exchangeability was demonstrated with the formation of a [4Fe-4S]-imidazole complex.Hydrogenases are metalloproteins that catalyze the reversible activation of molecular hydrogen and enable an organism to either utilize H 2 as a source of reducing power or to use protons as terminal electron acceptors, thus generating H 2 gas. Based on their metal content, hydrogenases are divided into three classes, [Ni-Fe]-hydrogenases (1), [FeFe]-hydrogenases (2, 3) and "iron-sulfur cluster-free" hydrogenase (4 -6), which do not appear to be structurally or phylogenetically related (7).[Fe-Fe]-hydrogenases are limited to certain anaerobic bacteria and anaerobic eukaryotes and are often involved in H 2 evolution with catalytic activities up to 100 times higher than those of [Ni-Fe]-hydrogenases (8). At their active site they contain a dinuclear iron center attached to the protein by only one bond between a cysteine residue and one of the two iron atoms (Fig. 1). This cysteine also serves as a ligand for an adjacent [4Fe-4S] cluster, so there is a sulfur bridge between the two metal sites (2, 3). [Fe-Fe]-hydrogenases also contain additional [2Fe-2S] and [4Fe-4S] clusters, which shuttle electrons between the H 2 activating site, inside the protein, and the redox partners at the surface.One remarkable property of the [Ni-Fe]-and [Fe-Fe]-hydrogenase active sites is the presence of carbon monoxide and cyanide ligands as clearly established by x-ray crystallography (1-3) and infrared spectroscopy (9). In both cases CO and CN Ϫ are found coordinated to the iron atoms and are thought to allow stabilization of the low iron oxidation and spin states required for activity (10). Infrared spectroscopy studies have also demonstrated the presence of CO ligands in the "iron-sulfur cluster-free" hydrogenase (11). In the unique case of [Fe-Fe]-hydrogenases an intriguing low molecular weight compound, still incompletely identified but often proposed to be a di(thiomethyl)amine, is bound to the di-iron site through a bridging bidentate coordination mode ( Fig. 1) (12). The presence of p...