The outer membrane (OM) of most Gram-negative bacteria contains lipopolysaccharide (LPS) in the outer leaflet. LPS, or endotoxin, is a molecule of important biological activities. In the host, LPS elicits a potent immune response, while in the bacterium, it plays a crucial role by establishing a barrier to limit entry of hydrophobic molecules. Before LPS is assembled at the OM, it must be synthesized at the inner membrane (IM) and transported across the aqueous periplasmic compartment. Much is known about the biosynthesis of LPS but, until recently, little was known about its transport and assembly. We applied a reductionist bioinformatic approach that takes advantage of the small size of the proteome of the Gram-negative endosymbiont Blochmannia floridanus to search for novel factors involved in OM biogenesis. This led to the discovery of two essential Escherichia coli IM proteins of unknown function, YjgP and YjgQ, which are required for the transport of LPS to the cell surface. We propose that these two proteins, which we have renamed LptF and LptG, respectively, are the missing transmembrane components of the ABC transporter that, together with LptB, functions to extract LPS from the IM en route to the OM.ABC transporter ͉ bioinformatics ͉ endosymbiont ͉ membrane biogenesis T he hallmark of Gram-negative bacteria is the presence of two extracytoplasmic membranes: the inner and outer membranes. The inner membrane (IM), which surrounds the cytoplasm, is separated from the outer membrane (OM) by an aqueous compartment known as the periplasm (1, 2). The IM is composed of phospholipids, integral transmembrane (TM) proteins that span the IM with ␣-helical TM domains, and lipoproteins (3, 4). In contrast, the OM is typically an asymmetric lipid bilayer where the inner leaflet is composed of phospholipids and the outer leaflet is composed mainly of lipopolysaccharide (LPS) (5). In addition, the OM contains lipoproteins and integral outer membrane proteins (OMPs), most of which span the OM via antiparallel -sheets that fold into -barrels (4, 6). Although some Gram-negative bacteria lack LPS and in others LPS is not essential (7), LPS is essential in Escherichia coli, Salmonella, and probably many other bacteria.In E. coli, the main function of the OM is to serve as a selective permeability barrier against many toxic chemicals, such as detergents and antibiotics (1). Porin proteins in the OM control permeability to hydrophilic molecules, but unlike typical phospholipid bilayers, the OM is quite impermeable to hydrophobic molecules, mainly because of LPS (1). For the OM to serve as a barrier, all OM components must be assembled properly. None of the components of the OM are synthesized in situ, so they must be transported to the OM from their site of synthesis. All OMPs and lipoproteins are made in the cytoplasm and cross the IM through the Sec translocon (3). After their signal sequence is removed, OMPs are thought to travel across the periplasm aided by chaperones that deliver them to the OM Bam complex (-barrel a...