Characterization of OglDREB2A gene from African rice (Oryza glaberrima), comparative analysis and its transcriptional regulation under salinity stress

Gumi, Abubakar Mohammad; Guha, Pritam Kanti; Mazumder, Abhishek; Jayaswal, Pawan Kumar; Mondal, Tapan Kumar

doi:10.1007/s13205-018-1098-1

Cited by 15 publications

(15 citation statements)

References 88 publications

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“…Though DREB genes are mainly involved in the process regulating the drought stress, other functions have been noted for some DREB genes. Previous studies have demonstrated that DREB genes can be induced by various abiotic stresses, including drought [ 10 – 13 ], low temperatures [ 14 – 17 ], heat stress [ 18 – 20 ] and high salt [ 21 – 23 ]. Overexpressing OsDREB2A in soybean enhanced salt tolerance by accumulating osmolytes and improving the expression levels of some stress-responsive genes and TFs [ 24 ].…”

Section: Introductionmentioning

confidence: 99%

Genome-wide identification and expression profiling of DREB genes in Saccharum spontaneum

Wang

Liu

et al. 2021

BMC Genomics

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Background The dehydration-responsive element-binding proteins (DREBs) are important transcription factors that interact with a DRE/CRT (C-repeat) sequence and involve in response to multiple abiotic stresses in plants. Modern sugarcane are hybrids from the cross between Saccharum spontaneum and Saccharum officinarum, and the high sugar content is considered to the attribution of S. officinaurm, while the stress tolerance is attributed to S. spontaneum. To understand the molecular and evolutionary characterization and gene functions of the DREBs in sugarcane, based on the recent availability of the whole genome information, the present study performed a genome-wide in silico analysis of DREB genes and transcriptome analysis in the polyploidy S. spontaneum. Results Twelve DREB1 genes and six DREB2 genes were identified in S. spontaneum genome and all proteins contained a conserved AP2/ERF domain. Eleven SsDREB1 allele genes were assumed to be originated from tandem duplications, and two of them may be derived after the split of S. spontaneum and the proximal diploid species sorghum, suggesting tandem duplication contributed to the expansion of DREB1-type genes in sugarcane. Phylogenetic analysis revealed that one DREB2 gene was lost during the evolution of sugarcane. Expression profiling showed different SsDREB genes with variable expression levels in the different tissues, indicating seven SsDREB genes were likely involved in the development and photosynthesis of S. spontaneum. Furthermore, SsDREB1F, SsDREB1L, SsDREB2D, and SsDREB2F were up-regulated under drought and cold condition, suggesting that these four genes may be involved in both dehydration and cold response in sugarcane. Conclusions These findings demonstrated the important role of DREBs not only in the stress response, but also in the development and photosynthesis of S. spontaneum.

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Section: Introductionmentioning

confidence: 99%

Genome-wide identification and expression profiling of DREB genes in Saccharum spontaneum

Wang

Liu

et al. 2021

BMC Genomics

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“…Dehydration responsive element-binding family genes have been identified in Arabidopsis thaliana (Hwang et al, 2012), perennial ryegrass (Xiong & Fei, 2006), Triticum L. (Mondini, Nachit & Pagnotta, 2015), Dendranthema (Yang et al, 2009), Zea mays (Qin et al, 2007) and Oryza sativa L. (Cui et al, 2011;Gumi et al, 2018;Matsukura et al, 2010). According to previous research in several plant species, most DREB genes respond to various stress conditions.…”

Section: Introductionmentioning

confidence: 99%

Identification and expression analysis of the DREB transcription factor family in pineapple (Ananas comosus (L.) Merr.)

Chai

Cheng

Yan

et al. 2020

PeerJ

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Background Dehydration responsive element-binding (DREB) transcription factors play a crucial role in plant growth, development and stress responses. Although DREB genes have been characterized in many plant species, genome-wide identification of the DREB gene family has not yet been reported in pineapple (Ananas comosus (L.) Merr.). Results Using comprehensive genome-wide screening, we identified 20 AcoDREB genes on 14 chromosomes. These were categorized into five subgroups. AcoDREBs within a group had similar gene structures and domain compositions. Using gene structure analysis, we showed that most AcoDREB genes (75%) lacked introns, and that the promoter regions of all 20 AcoDREB genes had at least one stress response-related cis-element. We identified four genes with high expression levels and six genes with low expression levels in all analyzed tissues. We detected expression changes under abiotic stress for eight selected AcoDREB genes. Conclusions This report presents the first genome-wide analysis of the DREB transcription factor family in pineapple. Our results provide preliminary data for future functional analysis of AcoDREB genes in pineapple, and useful information for developing new pineapple varieties with key agronomic traits such as stress tolerance.

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“…For example, recently, CBL4 and CBL9 were found to be related to drought stress in wheat [44]. Interestingly, LOC_Os02g06330 (AP2 domain containing protein) was found in the transcriptional regulation under salinity stress in African rice [63].…”

Section: Resultsmentioning

confidence: 99%

Two-State Co-Expression Network Analysis to Identify Genes Related to Salt Tolerance in Thai Rice

Suratanee

Chokrathok

Chutimanukul

et al. 2018

Genes

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Khao Dawk Mali 105 (KDML105) rice is one of the most important crops of Thailand. It is a challenging task to identify the genes responding to salinity in KDML105 rice. The analysis of the gene co-expression network has been widely performed to prioritize significant genes, in order to select the key genes in a specific condition. In this work, we analyzed the two-state co-expression networks of KDML105 rice under salt-stress and normal grown conditions. The clustering coefficient was applied to both networks and exhibited significantly different structures between the salt-stress state network and the original (normal-grown) network. With higher clustering coefficients, the genes that responded to the salt stress formed a dense cluster. To prioritize and select the genes responding to the salinity, we investigated genes with small partners under normal conditions that were highly expressed and were co-working with many more partners under salt-stress conditions. The results showed that the genes responding to the abiotic stimulus and relating to the generation of the precursor metabolites and energy were the great candidates, as salt tolerant marker genes. In conclusion, in the case of the complexity of the environmental conditions, gaining more information in order to deal with the co-expression network provides better candidates for further analysis.

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Characterization of OglDREB2A gene from African rice (Oryza glaberrima), comparative analysis and its transcriptional regulation under salinity stress

Cited by 15 publications

References 88 publications

Genome-wide identification and expression profiling of DREB genes in Saccharum spontaneum

Genome-wide identification and expression profiling of DREB genes in Saccharum spontaneum

Identification and expression analysis of the DREB transcription factor family in pineapple (Ananas comosus (L.) Merr.)

Two-State Co-Expression Network Analysis to Identify Genes Related to Salt Tolerance in Thai Rice

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