Intramammary infection with Streptococcus uberis is a common cause of bovine mastitis throughout the world. Several procedures to differentiate S. uberis isolates have been proposed. However, all are prone to interlaboratory variation, and none is suitable for the description of the population structure. We describe here the development of a multilocus sequence typing (MLST) scheme for S. uberis to help address these issues. The sequences of seven housekeeping gene fragments from each of 160 United Kingdom milk isolates of S. uberis were determined. Between 5 and 17 alleles were obtained per locus, giving the potential to discriminate between 1.3 ؋ 10 7 sequence types. In this study, 57 sequence types (STs) were identified. Statistical comparisons between the maximum-likelihood trees constructed by using the seven housekeeping gene fragments showed that the congruence was no better than that between each tree and trees of random topology, indicating there had been significant recombination within these loci. The population contained one major lineage (designated the ST-5 complex). This dominated the population, containing 24 STs and representing 112 isolates. The other 33 STs were not assigned to any clonal complex. All of the isolates in the ST-5 lineage carried hasA, a gene that is essential for capsule production. There was no clear association between ST or clonal complex and disease. The S. uberis MLST system offers researchers a valuable tool that allows further investigation of the population biology of this organism and insights into the epidemiology of this disease on a global scale.Mastitis remains the most economically important infectious disease of dairy cattle throughout the world. The annual loss due to clinical mastitis in the United Kingdom has been estimated at approximately £170 million (21), and between $1.5 to 2.0 billion in the United States (36). These losses can be attributed to a reduction in milk production, the associated costs of treatment, and the culling of persistent and repeatedly infected cows. Microorganisms that cause mastitis can be divided into those that show a contagious route of transmission, such as Staphylococcus aureus and Streptococcus agalactiae, and those that also frequently infect the udder from an environmental reservoir, such as Escherichia coli and Streptococcus uberis. The application of various control measures over the past two decades, based on improved milking practices, postmilking teat disinfection, and routine intramammary antimicrobial treatment after each lactation period, has proved effective against contagious pathogens (23) but had little if any effect on bacteria that infect the mammary gland from an environmental reservoir. S. uberis is currently responsible for ca. 33% of all clinical mastitis in the United Kingdom (14) and occurs at a similar frequency worldwide. The failure to control bovine mastitis caused by S. uberis is largely attributed to insufficient information regarding the epidemiology and pathogenesis of infection (2, 23).Investigati...