2009
DOI: 10.1007/s00705-009-0455-0
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Characterization of the complete genome sequence of pike fry rhabdovirus

Abstract: The complete genome sequence of pike fry rhabdovirus (PFRV), consisting of 11,097 nucleotides, was determined. The genome contains five genes, encoding the nucleoprotein (N), phosphoprotein (P), matrix protein (M), glycoprotein (G), and RNA-dependent RNA polymerase (L) protein in the order 3'-N-P-M-G-L-5'. 3' leader- and 5' trailer-sequences in the PFRV genome show inverse complementarity. The PFRV proteins share the highest homology to the proteins of spring viremia of carp virus (SVCV), ranging from 55.3 to … Show more

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Cited by 16 publications
(8 citation statements)
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“…In the last 10 years, virologists isolated and identified the following rhabdoviruses from aquaculture fish: Siniperca chuatsi rhabdovirus [104], Scophthalmus maximus rhabdovirus [105,106], Paralichthys olivaceus rhabdovirus [107], Monopterus albus rhabdovirus [108], snakehead rhabdovirus [109,110], Hirame rhabdovirus [111], and pike fry rhabdovirus [112]. Spring viremia of carp virus (SVCV), an earlier identified rhabdovirus, causes infectious hemorrhagic septicemia in common carp (Cyprinus carpio) [102,113].…”
Section: Rhabdovirus Genomesmentioning
confidence: 99%
“…In the last 10 years, virologists isolated and identified the following rhabdoviruses from aquaculture fish: Siniperca chuatsi rhabdovirus [104], Scophthalmus maximus rhabdovirus [105,106], Paralichthys olivaceus rhabdovirus [107], Monopterus albus rhabdovirus [108], snakehead rhabdovirus [109,110], Hirame rhabdovirus [111], and pike fry rhabdovirus [112]. Spring viremia of carp virus (SVCV), an earlier identified rhabdovirus, causes infectious hemorrhagic septicemia in common carp (Cyprinus carpio) [102,113].…”
Section: Rhabdovirus Genomesmentioning
confidence: 99%
“…The predicted sizes of the putative C proteins in viruses examined to date range from 41 amino acids (Piry virus) to 93 amino acids (Cocal virus). Interestingly, although spring viraemia of carp virus has the potential to encode highly basic proteins of 83 and 57 amino acids in an alternative ORF in the P gene (Hoffmann et al, 2002;Teng et al, 2007), there appears to be no alternative ORFs in the pike fry rhabdovirus P gene (Chen et al, 2009), suggesting its function may not be conserved across all fish vesiculoviruses. However, these data should be viewed cautiously as a single point mutation kb 15 14 13 12 11 10 9 8 7 6 5 4 3 2 1 0 Table 1. during adaptation to cell culture would be sufficient and inhibit expression of these accessory proteins by codon modification.…”
Section: Sigmavirusmentioning
confidence: 99%
“…Conserved residues in domains II and III are important for P protein function in mediating the binding of P protein to N-RNA template while the hypervariable hinge region of the P protein plays an important role in viral RNA synthesis and in the assembly of infectious VSV [39], hence the role of the same in CHPV needs further investigation. An additional ORF could be predicted within the P gene of the CHPV isolates as was previously identified or predicted in the P genes of VSV [69], other vesiculoviruses [23],[70] and SMRV [71]. However, the expression of the same in CHPV remains to be verified experimentally.…”
Section: Discussionmentioning
confidence: 93%