Treponema pallidum and other members of the genera Treponema, Spirochaeta, and Leptonema contain multiple cytoplasmic filaments that run the length of the organism just underneath the cytoplasmic membrane. These cytoplasmic filaments have a ribbon-like profile and consist of a major cytoplasmic filament protein subunit (CfpA, formerly called TpN83) with a relative molecular weight of ϳ80,000. Degenerate DNA primers based on N-terminal and CNBr cleavage fragment amino acid sequences of T. pallidum subsp. pallidum (Nichols) CfpA were utilized to amplify a fragment of the encoding gene (cfpA). A 6.8-kb EcoRI fragment containing all but the 5 end of cfpA was identified by hybridization with the resulting PCR product and cloned into Lambda ZAP II. The 5 region was obtained by inverse PCR, and the complete gene sequence was determined. The cfpA sequence contained a 2,034-nucleotide coding region, a putative promoter with consensus sequences (5-TTTACA-3 for ؊35 and 5-TACAAT-3 for ؊10) similar to the 70 recognition sequence of Escherichia coli and other organisms, and a putative ribosome-binding site (5-AGGAG-3). The deduced amino acid sequence of CfpA indicated a protein of 678 residues with a calculated molecular mass of 78.5 kDa and an estimated pI of 6.15. No significant homology to known proteins or structural motifs was found among known prokaryotic or eukaryotic sequences. Expression of a LacZ-CfpA fusion protein in E. coli was detrimental to survival and growth of the host strain and resulted in the formation of short, irregular filaments suggestive of partial self-assembly of CfpA. The cytoplasmic filaments of T. pallidum and other spirochetes appear to represent a unique form of prokaryotic intracytoplasmic inclusions.Spirochetes possess a number of unusual structural features, including helical or flat plane-wave shape and periplasmic flagella that tightly entwine the cell body and are encased by the outer membrane (13-16, 19, 31, 41). T. pallidum differs from other spirochetes in that it contains relatively few intramembranous protein particles in its outer membrane, as determined by freeze-fracture electron microscopy (33, 40). Seven of eight Treponema species examined, some Spirochaeta species, and Leptonema illini have also been shown to contain cytoplasmic filaments (also called cytoplasmic tubules and cytoplasmic fibrils) (14). Cytoplasmic filaments are ribbon-like structures 7.0 to 7.5 nm wide that run the length of the organism (5, 13-16, 19, 25, 31, 41). An array of 4 to 6 filaments lie in close apposition to the inner membrane and are always localized directly underneath the corresponding group of periplasmic flagella. The function of the cytoplasmic filaments is unknown. Their location indicates that they may be involved in cell motility, although other functions related to helical morphology or cell division are also possible (5).Masuda and Kawata (25) purified the cytoplasmic filaments of Treponema denticola TD-2, Treponema phagedenis biotypes Reiter and Kazan, three Treponema sp. strains (E-21,...