The nitric oxide synthases (NOS) are single polypeptides that encode a heme domain, a calmodulin binding motif, and a flavoprotein domain with sequence similarity to P450 reductase. Despite this basic structural similarity, the three major NOS isoforms differ significantly in their rates of ⅐NO synthesis, cytochrome c reduction, and NADPH utilization and in the Ca 2؉ dependence of these rates. To assign the origin of these differences to specific protein domains, we constructed chimeras in which the reductase domains of endothelial and inducible NOS, respectively, were replaced by the reductase domain of neuronal NOS. The results with the chimeric proteins confirm the modular organization of the NOS polypeptide chain and demonstrate that (a) similar residues establish the necessary contacts between the reductase and heme domains in the three NOS isoforms, (b) the maximal rate of ⅐NO synthesis is determined by the maximum intrinsic ability of the reductase domain to deliver electrons to the heme domain, (c) the Ca The flavin domain uncouples the electrons provided by NADPH and delivers them, one at a time, to the prosthetic heme iron atom. H 4 B is required for ⅐NO synthesis by all three proteins, but its role in the catalytic process remains unclear (9).Clear differences exist in the Ca 2ϩ and CaM dependence of the three NOS isoforms. The binding of CaM to nNOS and eNOS, the two constitutive isoforms, is Ca 2ϩ -dependent and reversible (10, 11), whereas the binding of CaM to iNOS is essentially a Ca 2ϩ -independent, irreversible process (12). Thus, the catalytic activities of nNOS and eNOS are regulated by cellular Ca 2ϩ -levels, whereas the activity of iNOS is insensitive to the Ca 2ϩ concentration and is primarily regulated by the rate at which the protein is synthesized (12). In addition to the heme, CaM, and reductase domains common to all the isoforms, nNOS has an additional N-terminal domain thought to be involved in subcellular targeting (13,14), and eNOS is unique in that it has myristoylation and palmitoylation sites that target it to the membrane (15, 16).The catalytic activities of the NOS isoforms differ considerably, regardless of whether activity is measured as ⅐NO formation or cytochrome c reduction. Regardless of which of these two parameters is measured, the activities of iNOS and nNOS are considerably higher than that of eNOS. Thus, in our hands, the V max values for ⅐NO formation by recombinant iNOS (17), nNOS (18), and eNOS (19) were found to be ϳ800, ϳ400, and ϳ130 nmol min Ϫ1 mg Ϫ1 , respectively, and the rates of electron transfer to cytochrome c in the presence of CaM and Ca 2ϩ were ϳ45,000, ϳ44,000, and ϳ1,800 nmol min Ϫ1 mg Ϫ1 , respectively. In each case, the reductase domain was able to transfer electrons to cytochrome c at a rate much greater than the maximum rate of ⅐NO production, although the nature of the ratelimiting step(s) in ⅐NO formation and the reason(s) for the differences in the catalytic activities of the isoforms are unclear. The reduction of cytochrome c by nNOS and eN...