More than 80% of people living in urban areas who monitor air pollution are exposed to air quality levels that exceed limits defined by the World Health Organization (WHO). Although all regions of the world are affected, populations in low-income cities are the most impacted. According to average annual levels of fine particulate matter (PM2.5, ambient particles with aerodynamic diameter of 2.5 μm or less) presented in the urban air quality database issued by WHO in 2016, as many as 33 Polish cities are among the 50 most polluted cities in the European Union (EU), with Silesian cities topping the list. The aim of this study was to characterize the indoor air quality in Silesian kindergartens based on the concentrations of gaseous compounds (SO2, NO2), PM2.5, and the sum of 15 PM2.5-bound polycyclic aromatic hydrocarbons (PAHs), including PM2.5-bound benzo(a)pyrene (BaP), as well as the mutagenic activity of PM2.5 organic extracts in Salmonella assay (strains: TA98, YG1024). The assessment of the indoor air quality was performed taking into consideration the pollution of the atmospheric air (outdoor). I/O ratios (indoor/outdoor concentration) for each investigated parameter were also calculated. Twenty-four-hour samples of PM2.5, SO2, and NO2 were collected during spring in two sites in southern Poland (Silesia), representing urban and rural areas. Indoor samples were taken in naturally ventilated kindergartens. At the same time, in the vicinity of the kindergarten buildings, the collection of outdoor samples of PM2.5, SO2, and NO2 was carried out. The content of BaP and the sum of 15 studied PAHs was determined in each 24-h sample of PM2.5 (indoor and outdoor). In the urban site, statistically lower concentrations of SO2 and NO2 were detected indoors compared to outdoors, whereas in the rural site, such a relationship was observed only for NO2. No statistically significant differences in the concentrations of PM2.5, PM2.5-bound BaP, and Σ15 PAHs in kindergartens (indoor) versus atmospheric (outdoor) air in the two studied areas were identified. Mutagenic effect of indoor PM2.5 samples was twice as low as in outdoor samples. The I/O ratios indicated that all studied air pollutants in the urban kindergarten originated from the ambient air. In the rural site concentrations of SO2, PM2.5 and BaP in the kindergarten were influenced by internal sources (gas and coal stoves).Electronic supplementary materialThe online version of this article (doi:10.1007/s11869-017-0505-9) contains supplementary material, which is available to authorized users.