Aurones are a small subgroup of flavonoids in which the
basic C6–C3–C6 skeleton
is arranged
as (Z)-2-benzylidenebenzofuran-3(2H)-one. These compounds are structural isomers of flavones and flavonols,
natural products reported as potent inhibitors of SARS-CoV-2 replication.
Herein, we report the design, synthesis, and anti-SARS-CoV-2 activity
of a series of 25 aurones bearing different oxygenated groups (OH,
OCH3, OCH2OCH3, OCH2O,
OCF2H, and OCH2C6H4R)
at the A- and/or B-rings using cell-based screening assays. We observed
that 12 of the 25 compounds exhibit EC50 < 3 μM
(8e, 8h, 8j, 8k, 8l, 8m, 8p, 8q, 8r, 8w, 8x, and 8y), of which five presented EC50 < 1 μM (8h, 8m, 8p, 8q, and 8w) without evident cytotoxic effect in Calu-3 cells. The
substitution of the A- and/or B-ring with OCH3, OCH2OCH3, and OCF2H groups seems beneficial
for the antiviral activity, while the corresponding phenolic derivatives
showed a significant decrease in the anti-SARS-CoV-2 activity. The
most potent compound of the series, aurone 8q (EC50 = 0.4 μM, SI = 2441.3), is 2 to 3 times more effective
than the polyphenolic flavonoids myricetin (2) and baicalein
(1), respectively. Investigation of the five more active
compounds as inhibitors of SARS-CoV-2 3CLpro based on molecular
dynamic calculations suggested that these aurones should detach from
the active site of 3CLpro, and, probably, they could bind
to another SARS-CoV-2 protein target (either receptor or enzyme).