The proton-translocating A 1 A 0 ATP synthase/hydrolase of Methanosarcina mazei Gö 1 was purified and shown to consist of six subunits of molecular masses of 65, 49, 40, 36, 25, and 7 kDa. Electron microscopy revealed that this enzyme is organized in two domains, the hydrophilic A 1 and the hydrophobic A 0 domain, which are connected by a stalk. Genes coding for seven hydrophilic subunits were cloned and sequenced. From these data it is evident that the 65-, 49-, 40-and 25-kDa subunits are encoded by ahaA, ahaB, ahaC, and ahaD, respectively; they are part of the A 1 domain or the stalk. In addition there are three more genes, ahaE, ahaF, and ahaG, encoding hydrophilic subunits, which were apparently lost during the purification of the protein. The A 0 domain consists of at least the 7-kDa proteolipid and the 36-kDa subunit for which the genes have not yet been found. In summary, it is proposed that the A 1 A 0 ATPase of Methanosarcina mazei Gö 1 contains at least nine subunits, of which seven are located in A 1 and/or the stalk and two in A 0 .Methanogenesis from H 2 ϩ CO 2 as catalyzed by the nonmarine methanogenic Archaea Methanosarcina barkeri or Methanosarcina mazei Gö1 is obligatorily coupled to the generation of two primary ion gradients at the same time: the reduction of the heterodisulfide of coenzyme M 1 and 7-mercaptoheptanoylthreoninephosphate is coupled to electrogenic translocation of protons across the membrane; in addition the penultimate step of methanogenesis, the transfer of the methyl group from methyltetrahydromethanopterin to coenzyme M as catalyzed by the corrinoid-containing multi-subunit enzyme methyltetrahydromethanopterin:coenzyme M methyltransferase, is coupled to vectorial sodium ion translocation across the membrane (1). M. mazei Gö1 uses both gradients directly as driving force for ATP synthesis but employs two different enzymes for this purpose: an A 1 A 0 ATP synthase couples ATP formation to ⌬ H ϩ, whereas a F 1 F 0 ATP synthase uses ⌬ Na ϩ as driving force (2). So far, methanogens are the only organisms known to contain two structurally different ATP synthases. The archaeal A 1 A 0 ATPase 2 shares properties with both, bacterial F 1 F 0 and eucaryal V 1 V 0 ATPases (3, 4). It clearly functions as an ATP synthase, which is in accordance with F 1 F 0 but in sharp contrast to V 1 V 0 ATPases; the structure of the proteolipid (one of the subunits of the A 0 domain), which is in the range of 6 -8 kDa in A 1 A 0 and F 1 F 0 ATPases but 16 kDa in V 1 V 0 ATPases, was suggested to be at least one of the reasons for this difference (5-8). On the other hand, the primary sequences of the subunits A and B of the catalytic A 1 domain are clearly more closely related to vacuolar V 1 V 0 ATPases (9 -12).3 Therefore, the A 1 A 0 ATPase is regarded as a chimeric protein in which the membrane domain is closely related to F 1 F 0 but the catalytic domain closely to V 1 V 0 ATPases.Although A 1 A 0 ATPase activity has been demonstrated in a number of Archaea, the subunit composition of this enzyme ...