Chikungunya virus is a positive-stranded RNA alphavirus. Structures of chikungunya virus-like particles in complex with strongly neutralizing antibody Fab fragments (8B10 and 5F10) were determined using cryo-electron microscopy and X-ray crystallography. By fitting the crystallographically determined structures of these Fab fragments into the cryo-electron density maps, we show that Fab fragments of antibody 8B10 extend radially from the viral surface and block receptor binding on the E2 glycoprotein. In contrast, Fab fragments of antibody 5F10 bind the tip of the E2 B domain and lie tangentially on the viral surface. Fab 5F10 fixes the B domain rigidly to the surface of the virus, blocking exposure of the fusion loop on glycoprotein E1 and therefore preventing the virus from becoming fusogenic. Although Fab 5F10 can neutralize the wild-type virus, it can also bind to a mutant virus without inhibiting fusion or attachment. Although the mutant virus is no longer able to propagate by extracellular budding, it can, however, enter the next cell by traveling through junctional complexes without being intercepted by a neutralizing antibody to the wild-type virus, thus clarifying how cell-to-cell transmission can occur.
IMPORTANCE
Alphaviral infections are transmitted mainly by mosquitoes. Chikungunya virus (CHIKV), which belongs to the Alphavirus genus, has a wide distribution in the OldWorld that has expanded in recent years into the Americas. There are currently no vaccines or drugs against alphaviral infections. Therefore, a better understanding of CHIKV and its associated neutralizing antibodies will aid in the development of effective treatments. C hikungunya virus (CHIKV) is the causative agent of an emerging disease. The first outbreaks occurred in the 1950s in Tanzania (1). The virus later reemerged in late 2005 on the Reunion islands and, subsequently, also in several Southeast Asian countries (2). However, by 2013 large epizootics/epidemics of CHIKV had spread into the Caribbean and by 2014 into South America as well as the United States (3). CHIKV is a member of the Togaviridae family, Alphavirus genus. Some alphaviruses, such as Sindbis virus (SINV), generally cause only mild disease symptoms in humans (4). Although mortality rates from CHIKV infections are low, CHIKV and Venezuelan equine encephalitis virus (VEEV) can be lethal or permanently disabling (2, 3). Furthermore, there are currently no treatments or vaccines for alphaviral infections.The structures of a number of alphaviruses have been determined to resolutions better than 10 Å, including the structures of chikungunya virus-like particles (CHIK-VLPs), which have been determined to 5.3-Å resolution (5-7), and of VEEV, determined to 4.6-Å resolution (6). Alphaviruses have an external diameter of about 700 Å and are icosahedral with quasi-Tϭ4 symmetry. They have a nucleocapsid core that is completely surrounded by a lipid envelope, derived from a host membrane, into which is embedded an icosahedral array of glycoproteins (8). A single virus...