The stacking behaviour of isolated thylakoids ofthe chlorophyll b-less barley mutant chlorina-f2, which is highly deficient in the light harvesting complex (LHCII), was investigated using electron microscopy. Pre-treatment with EDTA prevented thylakoid vesiculation during de-stacking, and was essential for the induction of re-stacking, which required a higher Mg ~* concentration (25 mM) than for wild type (5 mM). The stability of re-stacked chlorina-f2 thylakoids allowed their fractionation into photosystem I and photosystem II by treatment with Triton X-100 or [~-octyl glucoside, demonstrating thylakoid lateral heterogeneity in the absence of LHCII. An Mg'*-dependent aggregation of detergent-solubilized photosystem II from chlorina-f2 occurred at the same concentration (25 mM) as the one needed for the re-stacking of isolated thylakoids. We propose that thylakoid stacking and lateral heterogeneity in chlorina-f2 is not mediated by residual LHCII polypeptides, but by a component of photosystem [I. This mechanism may also be involved in stacking of wild type thylakoids. A simple method is described for the one-step isolation from chlorina-f2 of pure photosystem I and photosystem II preparations free of their respective chlorophyll b-containing light harvesting antenna proteins.