Squalene and noncholesterol sterols, e.g. lathosterol and plant sterols, the respective markers of cholesterol synthesis and absorption, are transported with cholesterol in serum lipoproteins. Their concentrations and ratios to cholesterol in serum and lipoproteins have not been carefully compared, especially in children and in marked hypercholesterolemia. Thus, we measured these variables with gas-liquid chromatography in 18 children with and 29 without familial hypercholesterolemia, all aged 5-17 y. Concentrations of most noncholesterol sterols were higher in serum, LDL, and intermediate density lipoprotein in the children with than those without familial hypercholesterolemia. Despite accumulation of noncholesterol sterols mainly in LDL (75% in familial hypercholesterolemia and 55% in non-familial hypercholesterolemia, p Ͻ 0.001), their ratios were mostly similar in serum and lipoproteins of the two groups. The ratios of squalene and lathosterol were higher in VLDL and intermediate density lipoprotein, whereas in LDL that of lathosterol was lower than the respective serum values in both groups. Absorption marker sterol ratios were highest in HDL in both groups. Thus, even though the ratios of noncholesterol sterols to cholesterol in serum reflect, in general, synthesis and absorption of cholesterol, their ratios in different lipoproteins could give additional information of cholesterol metabolism. The deranged catabolism of apo B containing LDL increases serum cholesterol levels in FH (1), even already at birth (2), resulting in development of arterial atherosclerotic lesions already at the ages of 3-19 y (3, 4). In addition to cholesterol, other minor sterols, called noncholesterol sterols, and squalene are also carried by serum lipoproteins. The cholesterol precursors squalene, lanosterol and other methyl sterols, and demethyl sterols (⌬ 8 -cholestenol, desmosterol, and lathosterol) reflect cholesterol synthesis (5-7), whereas plant sterols, campesterol and sitosterol, and cholestanol, a metabolite of cholesterol, reflect the efficiency of cholesterol absorption in normal and hyperlipidemic populations (8 -10), including heterozygous adults with FH (11). The values of serum noncholesterol sterols and squalene are, in general, standardized and expressed as ratios to cholesterol (5) to eliminate the influence of varying cholesterol concentrations between different individuals as well as different lipoproteins. However, it is not known how exactly the serum noncholesterol sterol to cholesterol ratios are related to the respective ratios in different lipoproteins, especially in healthy children and those with FH. The measurement of the sterols in lipoproteins are expected to give more accurate information on the release of cholesterol precursors from liver into the circulation and on the reverse traffic mechanism of sterols from tissues through HDL. Thus, the aim of the present study was to investigate serum and lipoprotein noncholesterol sterol concentrations in markedly hypercholesterolemic children and in con...