Spectral-data-processing and curve-fitting techniques have been applied to the decomposition of merocyanine-540 absorption spectra in aqueous, micellar and bilayer environments. The various resolved component bands have been assigned to dye monomers, dimers, or larger aggregates, either in polar or non-polar environments. The analysis of spectral parameters (A, , , and integrated intensity) of the overall spectra and of each component has revealed that merocyanine 540 is a useful probe in studies of membrane structure and dynamics using visible-absorption spectroscopy. In particular, the monomer A, ,, and the integrated intensity, i.e. area, of the dimer population are very useful in this respect. The monomer A, , , is especially sensitive to polarity changes and is thus useful, e.g. in the precise determination of critical micellar concentrations. The fractional area of the dimer increases with the packing density of the phospholipid-hydrocarbon region near the interface and is thus very sensitive to changes in vesicle curvature and to the presence of sterols or intrinsic polypeptides in the bilayer.Cyanine dyes have been frequently used as optical probes in membrane studies. In particular, the anionic dye merocyanine 540 (MCS40) has found widespread application [l]. Due to its amphipathic nature, MC540 ( Fig. 1) is soluble in solvents of a wide polarity range, including water and, to a limited extent, chloroform. The dye can easily be incorporated into the bilayer of phospholipid model membranes and partitions into the lipid phase when added externally to an aqueous liposome suspension [2,3]. MC540 exhibits an equilibrium between fluorescent monomers and non-fluorescing dimers which depends on the dispersing medium. In phospholipid bilayers the monomer chromophore is thought to be located near the membrane/water interface [3].The A, , , of the dye's visible spectrum correlates very well with the dielectric constant of the solvent [4]. This supports the use of MC540 as a solvatochromic dye; polarity changes in the microenvironment of the chromophore are monitored as I,,, shifts. Most important, however, is its ability to show variations in surface potential by changes in its absorbance and fluorescence spectra [ 5 , 61. The electrochromic properties of the dye are of particular interest when the object of study is too small to allow the application of microelectrodes. Furthermore, MC540 selectively stains leukemic and immature hemopoietic cells, also acting as a photosensitizing agent [7, 81. Correspondence to F. M. Go@ Department of Biochemistry, Faculty of Science, University of the Basque Country, Apartado 644, E-48080 Bilbao, SpainAbbreviations. CMC, critical micellar concentration; LUV, large unilamellar vesicles; MC540, merocyanine 540; MLV, multilamellar vesicles; PtdCho, phosphatidylcholine; SUV, small unilamellar vesicles.The versatility of the dye as an optical membrane probe explains the importance of a precise analysis of its spectrometric properties. This is particularly valid for the evaluation...