Concentration gradients of soluble proteins are believed to be responsible for control of morphogenesis of subcellular systems, but the mechanisms that generate the spatial organization of these subcellular gradients remain poorly understood. Here, we use a newly developed multipoint fluorescence fluctuation spectroscopy technique to study the ras-related nuclear protein (Ran) pathway, which forms soluble gradients around chromosomes in mitosis and is thought to spatially regulate microtubule behaviors during spindle assembly. We found that the distribution of components of the Ran pathway that influence microtubule behaviors is determined by their interactions with microtubules, resulting in microtubule nucleators being localized by the microtubules whose formation they stimulate. Modeling and perturbation experiments show that this feedback makes the length of the spindle insensitive to the length scale of the Ran gradient, allows the spindle to assemble outside the peak of the Ran gradient, and explains the scaling of the spindle with cell size. Such feedback between soluble signaling pathways and the mechanics of the cytoskeleton may be a general feature of subcellular organization.RanGTP gradient | spatial organization | microtubule nucleation | feedback loop | spindle size C ells exhibit internal order over a range of length scales (1). The manners in which nanometer-sized proteins specify micrometer-scale subcellular organization remain poorly understood. Either mechanics or chemistry could in principle produce order at length scales of cellular dimensions. The simplest mechanical phenomena result from the cytoskeleton: Filaments can be microns long and thus their individual lengths may even be sufficient to specify large-scale subcellular organization. Chemical processes can produce large, defined length scales through the interplay between diffusion and reactions (2). The simplest reaction-diffusion phenomenon, which has been widely discussed in the context of subcellular organization, is a scenario in which a signaling molecule is phosphorylated at one location in a cell and diffuses away and gradually dephosphorylates (3). Simple mathematical models of such source-sink scenarios predict that the resulting steady-state profile will be an exponentially decreasing gradient of the phosphorylated form around the source, with a length scale of λ = ffiffiffiffiffiffiffiffi ffi D=k p , where D is the diffusion coefficient of the signaling molecule and k is the rate of dephosphorylation (3). λ is the average distance a molecule diffuses before it is dephosphorylated.Although mechanics and chemistry are individually sufficient to give rise to structure at micrometer-length scales, increasing evidence suggests that the joint contribution of both of them leads to novel phenomena that might be important for subcellular organization: The interactions of diffusible molecules with the cytoskeleton can alter their mobility and localization, greatly modifying reaction-diffusion processes (4-8); large-scale patterns can...