2021
DOI: 10.1186/s40168-021-01160-4
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Circadian dynamics of the teleost skin immune-microbiome interface

Abstract: Background Circadian rhythms of host immune activity and their microbiomes are likely pivotal to health and disease resistance. The integration of chronotherapeutic approaches to disease mitigation in managed animals, however, is yet to be realised. In aquaculture, light manipulation is commonly used to enhance growth and control reproduction but may have unknown negative consequences for animal health. Infectious diseases are a major barrier to sustainable aquaculture and understanding the cir… Show more

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Cited by 33 publications
(24 citation statements)
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“…Compared with the traditional tools for rhythmicity detection, such as JTK_Cycle, Bio_Cycle, and RAIN, CircaCompare provides a means to quantify and statistically support differences between rhythms, specific to the characteristic desired (MESOR, amplitude, and phase) with high sensitivity ( 33 ). To the best of our knowledge, it is the latest tool for comparison between rhythms directly ( 60 , 61 ). We took advantage of this tool to explore the circadian characteristics in the gestational mice.…”
Section: Discussionmentioning
confidence: 99%
“…Compared with the traditional tools for rhythmicity detection, such as JTK_Cycle, Bio_Cycle, and RAIN, CircaCompare provides a means to quantify and statistically support differences between rhythms, specific to the characteristic desired (MESOR, amplitude, and phase) with high sensitivity ( 33 ). To the best of our knowledge, it is the latest tool for comparison between rhythms directly ( 60 , 61 ). We took advantage of this tool to explore the circadian characteristics in the gestational mice.…”
Section: Discussionmentioning
confidence: 99%
“…Skin sample preparation and 16S ribosomal RNA (rRNA) sequencing were conducted as previously described ( Ellison et al., 2021 ; Olesen et al., 2022 ). Genomic DNA was extracted using Wizard Âź Genomic DNA Purification Kit (Promega, Madison, WI, USA) according to the manufacturer’s protocol.…”
Section: Methodsmentioning
confidence: 99%
“…mice, chickens, and fish; Brooks et al, 2021; Hieke et al, 2019; Parris et al, 2019; Zhang et al, 2021). Other types of microbiomes also undergo diurnal oscillations, including cow rumen microbiomes (Ouyang et al, 2021; Shaani et al, 2018), fish skin microbiomes (Ellison et al, 2021), plant rhizosphere microbiomes (Hubbard et al, 2018), invertebrate microbiomes (Pfenning‐Butterworth et al, 2022; Roeder et al, 2022), and coral microbiomes (Rosenberg et al, 2022), highlighting the ubiquity of diurnal rhythms across host‐associated microbiomes.…”
Section: Hallmarks Of Gut Microbial Oscillationsmentioning
confidence: 99%