Previous studies of photosynthetic carbon fixation in the marine alga Gonyaulax have shown that the reaction rates in vivo vary threefold between day and night but that the in vitro activity of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco), which catalyzes the rate-limiting step in this process, remains constant. Using protein gel blotting, we confirm that Rubisco protein levels are constant over time. We present simultaneous measurements of the rhythms of CO 2 fixation and O 2 evolution and show that the two rhythms are ف 6 hr out of phase. We further show that the distribution of Rubisco within chloroplasts varies as a function of circadian time and that this rhythm in Rubisco distribution correlates with the CO 2 fixation rhythm. At times of high carbon fixation, Rubisco is found in pyrenoids, regions of the chloroplasts located near the cell center, and is separated from most of the light-harvesting protein PCP (for peridininchlorophyll a -protein), which is found in cortical regions of the plastids. We propose that the rhythm in Rubisco distribution is causally related to the rhythm in carbon fixation and suggest that several mechanisms involving enzyme sequestration could account for the increase in the efficiency of carbon fixation.
INTRODUCTIONCircadian rhythms are daily biochemical changes that are driven by circadian clocks but are not by themselves clocks. Biological clocks are characterized by transcriptional feedback loops that maintain their own oscillation (Dunlap, 1999;Shearman et al., 2000) and that receive phasing information from changes in light intensity (Crosthwaite et al., 1997;Ceriani et al., 1999) or temperature (Liu et al., 1998) that allows them to synchronize their oscillations with natural environmental cycles. In contrast, circadian rhythms are changes in an organism's physiology or biochemistry that, although rhythmic under constant conditions, are incapable of independent oscillations and instead require the timing signals provided by circadian clocks.A useful theoretical framework for understanding many biological rhythms is the notion that a central oscillator provides periodic regulatory signals that result in the control of a rate-limiting step (RLS) in a given biochemical pathway. Thus, understanding the regulation of the RLS is vital to understanding the clock's effect on organisms. For example, previous work on the bioluminescence rhythm in the dinoflagellate Gonyaulax has shown that both dinoflagellate luciferase (the reaction catalyst) and the luciferin (substrate) binding protein LBP contribute to the RLS of the nightly bioluminescence reaction. Cellular levels of both proteins vary seven-to 10-fold between day and night in phase with the 50-to 100-fold variations in bioluminescence capacity (Johnson et al., 1984;Morse et al., 1989a). In a vertebrate example, N -acetyltransferase catalyzes the RLS in vertebrate melatonin synthesis, and N -acetyltransferase levels correlate with the circulating melatonin rhythm (Gastel et al., 1998).Rhythms are generally con...