To identify potential involvement of tumor suppressor gene inactivation during leukemogenesis by Moloney murine leukemia virus (M-MuLV), a genome-wide scan for loss of heterozygosity (LOH) in tumor DNAs was made. To assess LOH, it is best to study mice that are heterozygous at many loci across the genome. Accordingly, we generated a collection of 52 M-MULV-induced tumor DNAs from C57BR/cdJ ؋ AKR/J F 1 (BRAKF1) hybrid mice. By using direct hybridization with oligonucleotides specific for three different classes of endogenous MuLV-related proviruses, 48 markers on 16 of 19 autosomes were simultaneously examined for allelic loss. No allelic losses were detected, with the exception of a common loss of markers on chromosome 4 in two tumors. The three autosomes that lacked informative endogenous proviral markers were also analyzed for LOH by PCR with simple-sequence length polymorphisms (SSLPs); one additional tumor showed LOH on chromosome 15. Further screening with chromosome 4 SSLPs identified one additional tumor with LOH on chromosome 4. Therefore, in total, the average fractional allelic loss was quite low (0.002), but the LOH frequency of 6% on chromosome 4 was highly statistically significant (P < 0.0005). Detailed SSLP mapping of the three tumors with LOH on chromosome 4 localized the region of common LOH to the distal 45 centimorgans, a region syntenic with human chromosomes 1 and 9. Candidate tumor suppressor genes, Mts1 (p16 INK4a ) and Mts2 (p15 INK4b ), have been mapped to this region, but by Southern blot analysis, no homozygous deletions were detected in either gene. One of three tumors with LOH on chromosome 4 also showed a proviral insertion near the c-myc proto-oncogene. These results suggested that tumor suppressor inactivation is generally infrequent in M-MuLV-induced tumors but that a subset of these tumors may have lost a tumor suppressor gene on chromosome 4.
MATERIALS AND METHODSMice. C57BR/cdJ females and AKR/J males were purchased from the Jackson Laboratory (Bar Harbor, Maine). BRAKF1 mice were derived by crossing female C57BR/cdJ mice with male AKR/J mice.Virus and inoculation of BRAKF1 mice. Viral stocks were clarified cell culture supernatants derived from NIH 3T3 fibroblasts productively infected with wildtype M-MuLV; portions of viral stocks were individually frozen at Ϫ70ЊC and were thawed and used only once (22). Virus infectivity titrations were performed by the UV-XC syncytial assay (69). BRAKF1 mice were inoculated intraperitoneally with 0.15 ml of virus stock (2 ϫ 10 4 XC PFU) within 48 h of birth.Tumor purification and DNA isolation. Moribund M-MuLV-infected BRAKF1 mice were sacrificed, and thymic tumor tissue was removed and rinsed gently with phosphate-buffered saline. Tumor cells were recovered by mincing the tumor in phosphate-buffered saline and passing the homogenate through a