Aim: To determine the relation between alterations in the retinal topography and thickness, visual acuity, and retinal pigment epithelium hypopigmentation in atrophic age related macular degeneration (AMD). Methods: 22 patients, mean age 74 (SD 8) years, with atrophic AMD were recruited. An optical imaging system based on the retinal thickness analyser (RTA) was applied to generate a series of 20 optical section images that encompass 2 mm × 2 mm retinal areas. The optical section images were digitised and analysed to provide topographic maps of the vitreoretinal and chorioretinal surfaces and the retinal thickness. Vitreoretinal and chorioretinal surface elevations and retinal thickness were determined. Results: Variation in the vitreoretinal surface height was moderately correlated with visual acuity (r = −0.4; p = 0.03; n = 22). Increase in variation of chorioretinal surface height was correlated with decrease in visual acuity (r = −0.5; p = 0.01; n = 22). The retinal thickness was not associated with visual acuity (r = 0.2; p = 0.2; n=22). Relative height of the vitreoretinal surface in eyes with retinal pigment epithelium (RPE) hypopigmentation was significantly less than eyes without RPE hypopigmentation (p = 0.005). Eyes with and without RPE hypopigmentation had a similar relative height of the chorioretinal surface (p = 0.4). Retinal thickness in eyes with RPE hypopigmentation was less than in eyes without RPE hypopigmentation (p = 0.04). Conclusion: Mapping of chorioretinal and vitreoretinal topography and retinal thickness provides objective and quantitative measurements of retinal structural abnormalities and shows promise as an adjunct for the evaluation of retinal structural changes due to AMD.A ge related macular degeneration (AMD) is the most common cause of vision loss in people over 50 years of age.1-5 In non-exudative AMD, loss of vision is caused by atrophy of the retinal pigment epithelium (RPE), outer retina, and choriocapillaris. In the exudative type of AMD, ingrowth of new vessels from the choroid into the subretina and/or sub-RPE space results in vision loss.The survival of the photoreceptors cells is critically dependent on the normal function of the RPE cells. The accumulation of extracellular deposits (drusen) between the RPE and the choroid is known to occur in AMD. 6 The location, composition, and structure of drusen associated with ageing and AMD have been studied. 7 8 Moreover, the RPE overlying drusen have altered lipofuscin autofluorescence, suggestive of additional changes in RPE metabolism due to AMD.9 Furthermore, clinicopathological studies have demonstrated thinning of the retina related to atrophy of retinal photoreceptors. 10