Mitochondrial electron transport is essential for survival in Plasmodium falciparum, making the cytochrome (cyt) bc 1 complex an attractive target for antimalarial drug development. Here we report that P. falciparum cultivated in the presence of a novel cyt bc 1 inhibitor underwent a fundamental transformation in biochemistry to a phenotype lacking a requirement for electron transport through the cyt bc 1 complex. Growth of the drug-selected parasite clone (SB1-A6) is robust in the presence of diverse cyt bc 1 inhibitors, although electron transport is fully inhibited by these same agents. This transformation defies expected molecular-based concepts of drug resistance, has important implications for the study of cyt bc 1 as an antimalarial drug target, and may offer a glimpse into the evolutionary future of Plasmodium.Unlike most other eukaryotic cells, Plasmodia do not rely on mitochondrial electron transport for energy production. Nonetheless, inhibition of cyt bc 1 complex electron transport is normally lethal to the parasite, presumably by interruption of essential links to de novo pyrimidine biosynthesis, via dihydroorotate dehydrogenase (DHODH), and to maintenance of the mitochondrial membrane potential. Although these interrelationships determine the viability of the parasite and our ability to reduce that viability, they are only generally understood. Review of Plasmodial electron transport and cyt bc 1 complex function are beyond the scope of this report, but in-depth discussions are available [1][2][3].The anti-malarial drug atovaquone occupies the quinol oxidase (Q o ) site of mitochondrial cyt b, inhibiting electron flux through the cyt bc 1 complex (ubiquinol:cytochrome c oxidoreductase or complex III) and collapsing mitochondrial membrane potential with a potency 1000-fold greater in Plasmodium than mammalian cells [4,5]. Unfortunately, high rates of recrudescent infection and treatment failure were seen after anti-malarial use of atovaquone alone [6], and treatment failures after atovaquone-proguanil combination therapy (Malarone®) were soon evident [7,8] despite only limited worldwide anti-malarial use. The rapid development and the diversity of atovaquone-resistant phenotypes and genotypes (perhaps a consequence of its mechanism of action [9]), the parallel evolution of resistance-encoding mutations [10] and their appearance with or without atovaquone exposure [11] in dispersed geographic locations, all indicate the strong propensity for atovaquone resistance. The hope that this risk can be overcome by appropriate combination therapy or by novel inhibitors continues to drive efforts to discover and develop cyt bc 1 inhibitor anti-malarials [12].Publisher's Disclaimer: This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final citable form. Please note that ...