The order Piroplasmida contains a diverse group of intracellular parasites, many of which can cause significant disease in humans, domestic animals, and wildlife. Two piroplasm species have been reported from raccoons (
Procyon lotor
),
Babesia lotori
(
Babesia
sensu stricto clade) and a species related to
Babesia microti
(called
B. microti
-like sp.). The goal of this study was to investigate prevalence, distribution, and diversity of
Babesia
in raccoons. We tested raccoons from selected regions in the United States and Canada for the presence of
Babesia
sensu stricto and
Babesia microti
-like sp. piroplasms. Infections of
Babesia microti
-like sp. were found in nearly all locations sampled, often with high prevalence, while
Babesia
sensu stricto infections had higher prevalence in the Southeastern United States (20–45% prevalence). Co-infections with both
Babesia
sp. were common. Sequencing of the partial 18S rRNA and cytochrome oxidase subunit 1 (
cox1
) genes led to the discovery of two new
Babesia
species, both found in several locations in the eastern and western United States. One novel
Babesia
sensu stricto sp. was most similar to
Babesia gibsoni
while the other
Babesia
species was present in the ‘western piroplasm’ group and was related to
Babesia conradae
. Phylogenetic analysis of the
cox1
sequences indicated possible eastern and western genetic variants for the three
Babesia
sensu stricto species. Additional analyses are needed to characterize these novel species; however, this study indicates there are now at least four species of piroplasms infecting raccoons in the United States and Canada (
Babesia microti
-like sp.,
Babesia lotori,
a novel
Babesia
sensu stricto sp., a novel western
Babesia
sp.) and a possible fifth species (
Babesia
sensu stricto) in raccoons in Japan.