The Nijmegen breakage syndrome (NBS1) gene was suggested as a prostate cancer susceptibility gene. This study was undertaken to determine, whether NBS1 expression is linked to clinically or molecularly relevant subgroups of prostate cancer. NBS1 expression was analyzed by immunohistochemistry on a tissue microarray containing 11,152 prostate cancer specimens. NBS1 expression was absent or only weakly detectable in benign prostate. In prostate cancers, NBS1 expression was found in 81.3% of interpretable tumors and was considered strong in 41.3% of cases. NBS1 upregulation was tightly linked to ERG-positive cancers (p < 0.0001). Within ERG-negative cancers, strong NBS1 immunostaining was linked to advanced pathological tumor stage, high Gleason grade, and positive nodal status (p < 0.0001 each), while high NBS1 immunostaining was only weakly associated with advanced pathological tumor stage in ERG-positive cancers (p 5 0.0099). A comparison with chromosomal deletions revealed a strong NBS1 upregulation in PTEN-deleted cancers, while deletions of 3p13, 5q21 and 6q15 did not affect NBS1 expression. High NBS1 expression was linked to biochemical recurrence in ERG-negative and PTEN nondeleted cancers (p < 0.0001), which was largely driven by high KPNA2 karyopherin alpha 2 expression. In conclusion, our study identifies an association of NBS1 expression with surrogates of genomic instability in prostate cancer including TMPRSS2-ERG rearrangements and PTEN deletion. The prognostic impact of NBS1 expression in ERG-negative, PTEN nondeleted cancers was dependent of the expression status of its interaction partner KPNA2.Prostate cancer is the most frequent cancer in men in developed countries and a leading cause of cancer-related death. It is estimated that about 5 to 10% of prostate cancers are hereditary in nature.1 Several genes have recently been identified or suggested as hereditary prostate cancer genes but the relevant genes are still unknown for most hereditary cancers. The high prevalence of sporadic prostate cancer is one of the causes rendering the search for hereditary prostate cancer genes complicated, especially in societies where large families are often small. More than 60% of men older than 60 carry prostate cancer but most of these patients will never face clinical consequences of their disease. The established pre-treatment prognostic parameters Gleason grade, tumor extent on biopsies, preoperative PSA and clinical parameters are statistically powerfull but still insufficent for optimal individual treatment decisions. The identification of these prostate cancers requiring therapy is thus another major need in prostate cancer research.Cancer development and progression is often caused by situations increasing a cell's risk to develop genomic alterations or its ability to repair such DNA alterations. Genes involved in DNA repair mechanisms are thus optimal candidates for affecting cancer progression and have also been identified as the cause for hereditary cancer syndromes such as in hereditary non-polypos...