Bardet-Biedl syndrome (BBS) is a genetic disorder affecting multiple systems and organs in the body. Several mutations in genes associated with BBS affect only photoreceptor cells and cause nonsyndromic retinitis pigmentosa (RP), raising the issue of why certain mutations manifest as a systemic disorder whereas other changes in the same gene affect only a specific cell type. Here, we show that cell-type-specific alternative splicing is responsible for confining the phenotype of the A-to-G substitution in the 3= splice site of BBS8 exon 2A (IVS1-2A>G mutation) in the BBS8 gene to photoreceptor cells. The IVS1-2A>G mutation leads to missplicing of BBS8 exon 2A, producing a frameshift in the BBS8 reading frame and thus eliminating the protein specifically in photoreceptor cells. Cell types other than photoreceptors skip exon 2A from the mature BBS8 transcript, which renders them immune to the mutation. We also show that the splicing of Bbs8 exon 2A in photoreceptors is directed exclusively by redundant splicing enhancers located in the adjacent introns. These intronic sequences are sufficient for photoreceptor-cell-specific splicing of heterologous exons, including an exon with a randomized sequence.
The BBSome is a multiprotein complex that is thought be required for the transport of proteins in and out of the cilia. The BBSome interacts with intraflagellar transport A (IFT-A) and IFT-B complexes and promotes the assembly of the IFT machinery (1-7). Several proteins, such as the G-protein-coupled receptors Smo, Sstr3, Mchr1, and Vipr2, depend on the BBSome for their ciliary transport, suggesting a possible role for the BBSome as an adapter that connects the IFT complex to its cargo in primary cilia (2,8,9). Mutations in genes that encode BBSome components and proteins associated with the BBSome are linked to systemic Bardet-Biedl syndrome (BBS). BBS is an autosomal recessive ciliopathy caused by defects in the BBSome that disrupt the normal ciliary function throughout the body. BBS symptoms include retinitis pigmentosa (RP), skeletal malformations, mental retardation, obesity, hearing impairment, shortened limbs, polydactyly, and kidney cysts (10, 11). In photoreceptor cells, BBSome deficiency leads to defects in rod outer-segment formation and localization of rod opsin and, ultimately, photoreceptor cell death (10-13). The severity of the BBS symptoms can vary considerably due to the nature of the mutation and the genetic background. Interestingly, phenotypes of different mutations in the same gene can range from a classical BBS that affects multiple systems to nonsyndromic RP, where the phenotype is limited to loss of photoreceptor function. For example, the ARL6 (BBS3) A89V, BBS1 M390R, and BBS8 IVS1-2AϾG mutations cause nonsyndromic RP, while several other mutations in the same genes manifest as classical BBS, presenting additional symptoms such as obesity, hearing impairment, polydactyly, and mental retardation in addition to the loss of vision (7,(14)(15)(16)(17)(18)(19). The existence of BBSome mutations th...