Fingered citron (Citrus medica L. var. sarcodactylis Swingle), a precious fruit ornamental plant, is sensitive to low temperature. Cold tolerance, evaluated by semi-lethal temperature, was lower in wild-type 'Qingpi' than in its mutant 'Aihua' trees obtained by c-radiation. The full-length cDNAs of two genes encoding fatty acid desaturases involved in unsaturated fatty acid biosynthesis were isolated from the fingered citron leaves. The Cms-FAD2 open reading frame (ORF) had 1,152 bp and was uninterrupted, encoding a polypeptide of 384 amino acids that showing 82% homology with the microsomal x-6 desaturase CiFAD2 in Davidia involucrate. The CmsFAD8 ORF contained 1,373 bp and 7 introns, encoding a polypeptide of 458 amino acids showing 76% homology with the plastidial x-3 desaturase BpFAD8 in Betula pendula. CmsFAD2 was expressed highly in leaves but low in roots and flowers, while CmsFAD8 was obviously expressed in three tissues. Compared with control group (28°C), the expression of CmsFAD2 and CmsFAD8 in leaves of two genotypes was significantly induced at 6°C. The increase of CmsFAD2 and CmsFAD8 was earlier and larger in coldtolerant 'Aihua' than in cold-sensitive 'Qingpi'. The linolenic acid content increased significantly in leaves of mutant 'Aihua' plants exposed to low temperature of 6°C. The results showed that a positive relationship between CmsFAD expression and genotype tolerance to cold may exist.